Wall clock time and date at job start Sun Mar 29 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47513 * 2 1 4 4 C 1.50704 * 109.46874 * 239.99741 * 2 1 3 5 5 H 1.07996 * 120.00236 * 240.00094 * 4 2 1 6 6 C 1.37886 * 119.99703 * 60.00510 * 4 2 1 7 7 N 1.31508 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46928 * 120.00056 * 8 6 4 11 11 H 1.48496 * 109.46876 * 239.99727 * 8 6 4 12 12 N 1.46895 * 109.46733 * 120.00300 * 2 1 3 13 13 C 1.46902 * 111.00148 * 274.99734 * 12 2 1 14 14 C 1.50701 * 109.47489 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.45127 * 260.00250 * 14 13 12 16 16 C 1.38839 * 118.50819 * 180.02562 * 15 14 13 17 17 C 1.38063 * 119.32377 * 0.27637 * 16 15 14 18 18 N 1.31941 * 120.85639 * 359.39934 * 17 16 15 19 19 C 1.32426 * 121.62036 * 0.63803 * 18 17 16 20 20 N 1.39011 * 119.70103 * 179.67631 * 19 18 17 21 21 H 1.08998 * 109.47513 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46840 * 300.00533 * 1 2 3 23 23 H 1.09000 * 109.46854 * 59.99801 * 1 2 3 24 24 H 0.96999 * 119.99736 * 179.97438 * 7 6 4 25 25 H 1.00905 * 111.00382 * 38.95274 * 12 2 1 26 26 H 1.08994 * 109.47134 * 60.00152 * 13 12 2 27 27 H 1.09008 * 109.46837 * 300.00132 * 13 12 2 28 28 H 1.08001 * 120.74608 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.33445 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.56691 * 179.72213 * 17 16 15 31 31 H 0.96997 * 119.99370 * 179.97438 * 20 19 18 32 32 H 0.96994 * 120.00533 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5884 -0.5217 3.5558 15 6 1.7057 -0.9789 4.5178 16 6 2.2157 -1.6592 5.6153 17 6 3.5789 -1.8531 5.7170 18 7 4.3969 -1.4113 4.7808 19 6 3.9493 -0.7577 3.7196 20 7 4.8476 -0.3039 2.7607 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7088 1.1613 -3.4844 25 1 1.4494 -1.4980 1.4100 26 1 1.0871 0.6162 2.5525 27 1 2.7589 1.0461 2.1182 28 1 0.6437 -0.8097 4.4177 29 1 1.5533 -2.0286 6.3842 30 1 3.9803 -2.3779 6.5714 31 1 4.5243 0.1749 1.9815 32 1 5.7975 -0.4660 2.8707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:27 Heat of formation + Delta-G solvation = 12.242297 kcal Electronic energy + Delta-G solvation = -14672.258862 eV Core-core repulsion = 12245.447708 eV Total energy + Delta-G solvation = -2426.811154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.10443 -37.85587 -35.57875 -34.81402 -33.22222 -30.84362 -29.37758 -27.23892 -26.05029 -23.77688 -22.57118 -22.06873 -18.60562 -18.24224 -18.22640 -16.83043 -16.29269 -15.82882 -15.68050 -15.36517 -14.83641 -14.66219 -14.31723 -13.77431 -13.59158 -13.44477 -12.93925 -12.69276 -12.68510 -12.20050 -12.10931 -11.79406 -11.63786 -11.04943 -10.51257 -10.47930 -10.30847 -8.97410 -8.58780 -8.08639 -6.19498 0.41940 0.67106 1.41598 1.44274 1.55825 2.44486 2.78402 3.06853 3.19716 3.71282 3.88585 4.01894 4.23508 4.33543 4.51864 4.68891 4.74125 4.82569 4.91029 4.98608 5.11997 5.27326 5.41198 5.51981 5.70883 5.82994 5.85661 6.28099 6.45310 6.65062 6.72001 6.79823 6.95490 7.43391 7.50615 8.96377 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044047 B = 0.006457 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.535495 B = 4335.409082 C = 4671.716682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.676 5.676 13 C 0.115 3.885 14 C -0.211 4.211 15 C -0.037 4.037 16 C -0.235 4.235 17 C 0.134 3.866 18 N -0.575 5.575 19 C 0.406 3.594 20 N -0.840 5.840 21 H 0.030 0.970 22 H 0.026 0.974 23 H 0.061 0.939 24 H 0.260 0.740 25 H 0.329 0.671 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.182 0.818 31 H 0.413 0.587 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -2.907 13.895 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.549 4.549 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.306 5.306 13 C -0.015 4.015 14 C -0.219 4.219 15 C -0.063 4.063 16 C -0.258 4.258 17 C -0.023 4.023 18 N -0.294 5.294 19 C 0.168 3.832 20 N -0.383 5.383 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.146 0.854 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.245 0.755 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.629 -2.837 13.655 14.411 hybrid contribution -1.416 0.208 -1.269 1.913 sum 2.214 -2.628 12.386 12.854 Atomic orbital electron populations 1.22250 1.00126 0.99184 1.00133 1.18960 0.90004 0.92876 0.87420 0.97512 1.21450 1.30183 1.12271 0.91005 0.92947 1.25666 0.95528 0.95866 1.01742 1.70005 1.38084 1.24257 1.23863 0.85511 0.78012 0.78577 0.79502 1.19589 1.20768 1.20752 1.60758 1.57843 1.09130 1.02882 1.20537 0.98577 0.94256 0.88129 1.20176 0.92961 1.09038 0.99728 1.21540 1.00022 0.92695 0.92089 1.22047 0.96958 1.05778 1.00996 1.22924 0.90362 0.93619 0.95414 1.67237 1.41045 1.17080 1.04018 1.18353 0.87821 0.89216 0.87856 1.42338 1.08537 1.63155 1.24261 0.95083 0.95458 0.92030 0.93054 0.85394 0.94925 0.92010 0.83944 0.82314 0.80123 0.75529 0.76717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.40 8.94 71.98 0.64 -6.76 16 2 C 0.22 10.58 2.57 44.17 0.11 10.70 16 3 H 0.01 0.37 7.80 -2.39 -0.02 0.36 16 4 C -0.51 -27.86 8.84 25.60 0.23 -27.64 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.55 5.30 84.66 0.45 1.00 16 7 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 8 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.68 -27.60 6.22 -499.45 -3.11 -30.71 16 13 C 0.11 3.97 4.92 85.56 0.42 4.39 16 14 C -0.21 -6.57 5.43 -19.64 -0.11 -6.67 16 15 C -0.04 -0.96 9.81 22.44 0.22 -0.74 16 16 C -0.24 -5.10 10.10 22.37 0.23 -4.87 16 17 C 0.13 3.16 11.17 84.63 0.95 4.10 16 18 N -0.57 -17.23 10.39 -193.26 -2.01 -19.23 16 19 C 0.41 12.91 7.73 133.04 1.03 13.94 16 20 N -0.84 -24.89 8.99 -55.44 -0.50 -25.38 16 21 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 22 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 23 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.33 13.19 8.46 -89.69 -0.76 12.43 16 26 H 0.03 1.10 7.33 -2.39 -0.02 1.09 16 27 H 0.06 2.19 7.02 -2.38 -0.02 2.17 16 28 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.41 12.93 7.04 -92.71 -0.65 12.28 16 32 H 0.40 10.40 8.95 -92.71 -0.83 9.57 16 Total: -1.00 -61.23 271.16 -0.27 -61.49 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -1.09 Total: 32.76 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.17 Total: -12.54 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -5.37 Total: -127.49 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -61.23 -0.27 -61.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.735 kcal (2) G-P(sol) polarization free energy of solvation -61.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds