Wall clock time and date at job start Sun Mar 29 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50701 * 109.46981 * 119.99749 * 2 1 3 5 5 H 1.07996 * 120.00094 * 119.99719 * 4 2 1 6 6 C 1.37879 * 119.99939 * 299.99907 * 4 2 1 7 7 N 1.31508 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47327 * 89.99869 * 8 6 4 10 10 H 1.48505 * 109.47389 * 210.00314 * 8 6 4 11 11 H 1.48500 * 109.47041 * 329.99895 * 8 6 4 12 12 N 1.46895 * 109.47402 * 239.99574 * 2 1 3 13 13 C 1.46902 * 111.00148 * 85.00363 * 12 2 1 14 14 C 1.50701 * 109.47489 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.45127 * 260.00250 * 14 13 12 16 16 C 1.38839 * 118.50819 * 180.02562 * 15 14 13 17 17 C 1.38063 * 119.32377 * 0.27637 * 16 15 14 18 18 N 1.31941 * 120.85639 * 359.39934 * 17 16 15 19 19 C 1.32426 * 121.62036 * 0.63803 * 18 17 16 20 20 N 1.39011 * 119.70103 * 179.67631 * 19 18 17 21 21 H 1.08995 * 109.47494 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47266 * 300.00349 * 1 2 3 23 23 H 1.09004 * 109.46498 * 60.00005 * 1 2 3 24 24 H 0.97003 * 120.00291 * 180.02562 * 7 6 4 25 25 H 1.00905 * 111.00382 * 208.95903 * 12 2 1 26 26 H 1.08994 * 109.47134 * 60.00152 * 13 12 2 27 27 H 1.09008 * 109.46837 * 300.00132 * 13 12 2 28 28 H 1.08001 * 120.74608 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.33445 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.56691 * 179.72213 * 17 16 15 31 31 H 0.96997 * 119.99370 * 179.97438 * 20 19 18 32 32 H 0.96994 * 120.00533 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3469 14 6 2.5875 -0.5220 -3.5560 15 6 3.9105 -0.4121 -3.9449 16 6 4.3324 -1.1152 -5.0654 17 6 3.4250 -1.8928 -5.7569 18 7 2.1703 -1.9839 -5.3592 19 6 1.7295 -1.3285 -4.2962 20 7 0.3976 -1.4481 -3.9167 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 0.7087 1.1615 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 2.7590 1.0460 -2.1182 27 1 1.0872 0.6162 -2.5526 28 1 4.5996 0.2072 -3.3900 29 1 5.3586 -1.0505 -5.3955 30 1 3.7479 -2.4378 -6.6317 31 1 0.0703 -0.9703 -3.1386 32 1 -0.2045 -2.0093 -4.4299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:31 Heat of formation + Delta-G solvation = 31.409063 kcal Electronic energy + Delta-G solvation = -14680.331265 eV Core-core repulsion = 12254.351245 eV Total energy + Delta-G solvation = -2425.980021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98294 -36.10821 -34.37335 -33.20510 -31.62909 -29.51102 -27.93621 -25.49843 -24.52847 -22.64193 -21.32590 -19.80242 -17.38960 -17.11738 -16.56780 -15.11774 -14.87757 -14.54635 -14.20847 -14.12187 -13.43931 -13.15582 -12.90563 -12.60301 -12.05139 -11.58843 -11.12304 -10.85844 -10.75605 -10.57285 -10.38959 -10.17836 -10.04952 -9.34681 -9.19935 -8.86857 -8.51323 -7.51433 -7.31043 -6.06481 -4.12947 1.52714 1.75095 3.27189 3.34098 3.38261 3.86992 4.18402 4.38226 4.88212 5.08256 5.24691 5.28023 5.33174 5.58062 5.70201 5.82749 6.05823 6.22467 6.37189 6.61354 6.79260 6.88159 7.04569 7.15424 7.43043 7.60331 7.74121 7.77254 7.83950 8.21805 8.33121 8.53768 8.60840 8.97199 9.53345 10.99734 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.006323 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.689156 B = 4427.222224 C = 4691.778704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.106 3.894 14 C -0.188 4.188 15 C -0.035 4.035 16 C -0.242 4.242 17 C 0.138 3.862 18 N -0.555 5.555 19 C 0.424 3.576 20 N -0.841 5.841 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.333 0.667 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.416 0.584 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -1.692 -12.243 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.024 4.024 14 C -0.196 4.196 15 C -0.061 4.061 16 C -0.265 4.265 17 C -0.020 4.020 18 N -0.274 5.274 19 C 0.185 3.815 20 N -0.384 5.384 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.150 0.850 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.166 0.834 31 H 0.249 0.751 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.659 -2.318 -12.692 13.009 hybrid contribution 1.354 0.583 1.694 2.245 sum 3.013 -1.735 -10.999 11.535 Atomic orbital electron populations 1.21735 0.97909 0.99323 0.99383 1.19133 0.92572 0.92407 0.85616 0.98096 1.21250 1.31486 1.12536 0.90410 0.92231 1.24913 0.95006 0.94997 0.99055 1.69887 1.36567 1.22921 1.23513 0.86521 0.78478 0.80089 0.82458 1.20749 1.21187 1.19860 1.60819 1.32467 1.32563 1.05572 1.20659 0.99497 0.93327 0.88942 1.20295 0.94435 1.04381 1.00480 1.21258 0.94374 0.95781 0.94680 1.21688 1.01058 1.04094 0.99642 1.22242 0.87630 0.94573 0.97512 1.67166 1.17975 1.25922 1.16318 1.18132 0.86146 0.88819 0.88434 1.42343 1.06865 1.54627 1.34592 0.94886 0.90002 0.97845 0.92903 0.84979 0.95160 0.91429 0.85446 0.85704 0.83446 0.75101 0.77499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.19 37.16 0.34 -2.64 16 2 C 0.21 5.16 2.60 -68.87 -0.18 4.98 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -14.01 8.59 -34.44 -0.30 -14.31 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.11 6.29 -109.22 -0.69 -14.80 16 13 C 0.11 1.87 4.92 -4.97 -0.02 1.85 16 14 C -0.19 -3.05 5.43 -104.27 -0.57 -3.62 16 15 C -0.03 -0.49 9.81 -39.32 -0.39 -0.88 16 16 C -0.24 -3.07 10.10 -39.42 -0.40 -3.47 16 17 C 0.14 1.83 11.17 -17.57 -0.20 1.64 16 18 N -0.56 -8.73 10.39 -12.44 -0.13 -8.86 16 19 C 0.42 6.86 7.73 -155.01 -1.20 5.66 16 20 N -0.84 -12.19 8.99 31.13 0.28 -11.91 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 23 H 0.00 0.05 7.45 -51.93 -0.39 -0.33 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.33 7.01 8.22 -39.29 -0.32 6.68 16 26 H 0.03 0.54 7.95 -51.93 -0.41 0.13 16 27 H 0.07 1.18 6.40 -51.92 -0.33 0.85 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.42 6.23 7.04 -40.82 -0.29 5.94 16 32 H 0.40 4.97 8.95 -40.82 -0.37 4.60 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -28.97 270.84 -7.90 -36.87 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.05 Total: 12.15 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -3.00 Total: -9.18 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.09 Total: -60.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.97 -7.90 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.274 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds