Wall clock time and date at job start Sun Mar 29 2020 22:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50701 * 109.46981 * 119.99749 * 2 1 3 5 5 H 1.07996 * 120.00094 * 119.99719 * 4 2 1 6 6 C 1.37879 * 119.99939 * 299.99907 * 4 2 1 7 7 N 1.31508 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47327 * 89.99869 * 8 6 4 10 10 H 1.48505 * 109.47389 * 210.00314 * 8 6 4 11 11 H 1.48500 * 109.47041 * 329.99895 * 8 6 4 12 12 N 1.46895 * 109.47402 * 239.99574 * 2 1 3 13 13 C 1.46902 * 111.00148 * 85.00363 * 12 2 1 14 14 C 1.50701 * 109.47489 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.45127 * 260.00250 * 14 13 12 16 16 C 1.38839 * 118.50819 * 180.02562 * 15 14 13 17 17 C 1.38063 * 119.32377 * 0.27637 * 16 15 14 18 18 N 1.31941 * 120.85639 * 359.39934 * 17 16 15 19 19 C 1.32426 * 121.62036 * 0.63803 * 18 17 16 20 20 N 1.39011 * 119.70103 * 179.67631 * 19 18 17 21 21 H 1.08995 * 109.47494 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47266 * 300.00349 * 1 2 3 23 23 H 1.09004 * 109.46498 * 60.00005 * 1 2 3 24 24 H 0.97003 * 120.00291 * 180.02562 * 7 6 4 25 25 H 1.00905 * 111.00382 * 208.95903 * 12 2 1 26 26 H 1.08994 * 109.47134 * 60.00152 * 13 12 2 27 27 H 1.09008 * 109.46837 * 300.00132 * 13 12 2 28 28 H 1.08001 * 120.74608 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.33445 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.56691 * 179.72213 * 17 16 15 31 31 H 0.96997 * 119.99370 * 179.97438 * 20 19 18 32 32 H 0.96994 * 120.00533 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3469 14 6 2.5875 -0.5220 -3.5560 15 6 3.9105 -0.4121 -3.9449 16 6 4.3324 -1.1152 -5.0654 17 6 3.4250 -1.8928 -5.7569 18 7 2.1703 -1.9839 -5.3592 19 6 1.7295 -1.3285 -4.2962 20 7 0.3976 -1.4481 -3.9167 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 0.7087 1.1615 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 2.7590 1.0460 -2.1182 27 1 1.0872 0.6162 -2.5526 28 1 4.5996 0.2072 -3.3900 29 1 5.3586 -1.0505 -5.3955 30 1 3.7479 -2.4378 -6.6317 31 1 0.0703 -0.9703 -3.1386 32 1 -0.2045 -2.0093 -4.4299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:30 Heat of formation + Delta-G solvation = 11.206882 kcal Electronic energy + Delta-G solvation = -14681.207298 eV Core-core repulsion = 12254.351245 eV Total energy + Delta-G solvation = -2426.856053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11456 -37.79369 -35.58065 -34.84184 -33.19722 -30.89941 -29.43355 -27.41774 -26.07617 -23.78283 -22.60544 -21.67359 -18.75608 -18.29119 -18.24103 -16.91088 -16.19952 -15.75684 -15.70805 -15.58218 -14.92746 -14.58492 -14.44527 -13.80687 -13.59952 -13.33126 -12.92429 -12.73781 -12.42998 -12.23749 -12.17394 -11.78476 -11.64800 -10.92730 -10.59582 -10.49575 -10.31198 -9.07791 -8.59968 -8.13462 -6.27437 0.40693 0.65893 1.41296 1.42917 1.53117 2.41141 2.77007 3.05552 3.15365 3.69309 3.86911 4.00900 4.22528 4.31795 4.50672 4.68383 4.81545 4.83788 4.97775 5.07800 5.22013 5.26754 5.48225 5.50242 5.66508 5.84092 5.87215 6.23609 6.41595 6.48578 6.70675 6.75444 6.97485 7.42304 7.43137 8.91563 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.006323 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.689156 B = 4427.222224 C = 4691.778704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.029 1.029 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.675 5.675 13 C 0.114 3.886 14 C -0.211 4.211 15 C -0.039 4.039 16 C -0.235 4.235 17 C 0.135 3.865 18 N -0.573 5.573 19 C 0.407 3.593 20 N -0.839 5.839 21 H 0.029 0.971 22 H 0.055 0.945 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.330 0.670 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.413 0.587 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -2.524 -13.186 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.012 1.012 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.306 5.306 13 C -0.016 4.016 14 C -0.219 4.219 15 C -0.065 4.065 16 C -0.257 4.257 17 C -0.022 4.022 18 N -0.292 5.292 19 C 0.169 3.831 20 N -0.383 5.383 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.176 0.824 30 H 0.200 0.800 31 H 0.244 0.756 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.796 -3.156 -13.658 14.294 hybrid contribution 1.055 0.843 1.874 2.310 sum 3.852 -2.314 -11.784 12.612 Atomic orbital electron populations 1.21543 0.97415 0.98970 0.99252 1.18940 0.92933 0.90781 0.86681 1.01153 1.21574 1.31651 1.12627 0.91710 0.92576 1.25684 0.95172 0.95675 1.01902 1.70010 1.37359 1.24022 1.24156 0.85526 0.78031 0.78978 0.78887 1.20126 1.20841 1.19520 1.60738 1.32248 1.32741 1.04884 1.20563 0.99550 0.92883 0.88554 1.20165 0.95588 1.05757 1.00400 1.21541 0.93800 0.95862 0.95313 1.22044 1.02565 1.02656 0.98452 1.22928 0.86878 0.94204 0.98217 1.67243 1.19374 1.26290 1.16282 1.18318 0.86607 0.89256 0.88935 1.42311 1.06755 1.54694 1.34511 0.95170 0.92587 0.95468 0.92837 0.85282 0.95549 0.91518 0.84230 0.82362 0.80019 0.75560 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 9.19 71.98 0.66 -4.79 16 2 C 0.21 10.71 2.60 44.17 0.11 10.83 16 3 H -0.03 -1.60 7.80 -2.39 -0.02 -1.62 16 4 C -0.54 -29.27 8.59 25.60 0.22 -29.05 16 5 H 0.06 3.03 7.62 -2.91 -0.02 3.00 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 8 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.68 -28.00 6.29 -499.47 -3.14 -31.14 16 13 C 0.11 4.03 4.92 85.56 0.42 4.46 16 14 C -0.21 -6.65 5.43 -19.64 -0.11 -6.76 16 15 C -0.04 -1.04 9.81 22.44 0.22 -0.82 16 16 C -0.23 -5.20 10.10 22.37 0.23 -4.97 16 17 C 0.13 3.18 11.17 84.63 0.95 4.12 16 18 N -0.57 -16.97 10.39 -193.26 -2.01 -18.98 16 19 C 0.41 12.79 7.73 133.04 1.03 13.82 16 20 N -0.84 -23.90 8.99 -55.44 -0.50 -24.40 16 21 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 23 H 0.03 1.12 7.45 -2.39 -0.02 1.11 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.33 13.92 8.22 -89.69 -0.74 13.18 16 26 H 0.03 0.95 7.95 -2.39 -0.02 0.93 16 27 H 0.07 2.33 6.40 -2.38 -0.02 2.32 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.41 12.24 7.04 -92.71 -0.65 11.59 16 32 H 0.40 9.89 8.95 -92.71 -0.83 9.06 16 Total: -1.00 -61.33 270.84 -0.27 -61.60 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -1.07 Total: 31.45 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.18 Total: -11.89 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.41 Total: -126.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.33 -0.27 -61.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.805 kcal (2) G-P(sol) polarization free energy of solvation -61.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds