Wall clock time and date at job start Sun Mar 29 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 112.93924 * 2 1 4 4 C 1.53950 * 113.74155 * 228.26927 * 2 1 3 5 5 N 1.47581 * 86.11155 * 222.04515 * 4 2 1 6 6 C 1.36935 * 134.48953 * 204.63627 * 5 4 2 7 7 H 1.07994 * 120.00205 * 180.02562 * 6 5 4 8 8 C 1.38815 * 119.99747 * 0.02562 * 6 5 4 9 9 N 1.31615 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99806 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46908 * 59.99668 * 10 8 6 12 12 H 1.48500 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47303 * 300.00110 * 10 8 6 14 14 C 1.47583 * 91.01883 * 24.64142 * 5 4 2 15 15 H 1.09007 * 113.86845 * 89.67060 * 14 5 4 16 16 C 1.50694 * 113.76804 * 221.05491 * 14 5 4 17 17 C 1.34515 * 125.78835 * 196.49105 * 16 14 5 18 18 C 1.41385 * 106.84000 * 179.97438 * 17 16 14 19 19 C 1.34507 * 106.84104 * 0.02562 * 18 17 16 20 20 O 1.34300 * 108.42410 * 359.97438 * 19 18 17 21 21 H 1.08993 * 109.47171 * 288.40417 * 1 2 3 22 22 H 1.08999 * 109.47062 * 48.40787 * 1 2 3 23 23 H 1.09000 * 109.46843 * 168.40758 * 1 2 3 24 24 H 1.08998 * 109.47021 * 191.58891 * 3 2 1 25 25 H 1.08991 * 109.47762 * 311.59304 * 3 2 1 26 26 H 1.08997 * 109.46930 * 71.59631 * 3 2 1 27 27 H 1.09000 * 113.76835 * 336.34847 * 4 2 1 28 28 H 1.08996 * 113.76326 * 107.74190 * 4 2 1 29 29 H 0.97000 * 119.99835 * 179.97438 * 9 8 6 30 30 H 1.08001 * 126.57671 * 0.25194 * 17 16 14 31 31 H 1.07995 * 126.57686 * 179.97438 * 18 17 16 32 32 H 1.08001 * 125.78820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1264 1.4090 0.0000 4 6 2.1499 -0.9380 -1.0517 5 7 3.1105 -1.3199 0.0016 6 6 4.3824 -1.8274 0.0022 7 1 4.8838 -2.0267 0.9377 8 6 5.0272 -2.0856 -1.1997 9 7 4.4159 -1.8432 -2.3398 10 14 6.7625 -2.7772 -1.1988 11 1 6.7734 -4.0860 -0.4973 12 1 7.2222 -2.9625 -2.5987 13 1 7.6712 -1.8334 -0.4997 14 6 2.1499 -0.9354 1.0539 15 1 1.4896 -1.7449 1.3656 16 6 2.7792 -0.2098 2.2151 17 6 2.2194 -0.0256 3.4243 18 6 3.1518 0.6996 4.2012 19 6 4.2254 0.9156 3.4201 20 8 3.9942 0.3624 2.2184 21 1 -0.3633 0.3244 0.9750 22 1 -0.3633 0.6822 -0.7686 23 1 -0.3633 -1.0067 -0.2065 24 1 3.1951 1.3512 -0.2064 25 1 1.6399 2.0095 -0.7685 26 1 1.9692 1.8700 0.9751 27 1 1.4904 -1.7492 -1.3599 28 1 2.6050 -0.4151 -1.8928 29 1 4.8666 -2.0233 -3.1796 30 1 1.2463 -0.3699 3.7422 31 1 3.0259 1.0195 5.2249 32 1 5.1214 1.4443 3.7102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602926534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:48 Heat of formation + Delta-G solvation = 66.529064 kcal Electronic energy + Delta-G solvation = -15571.008848 eV Core-core repulsion = 13114.258993 eV Total energy + Delta-G solvation = -2456.749854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92590 -38.61020 -32.74785 -32.29904 -30.45258 -29.36174 -26.80126 -26.12081 -24.55666 -21.68269 -20.97380 -20.02148 -17.79681 -17.04462 -16.15520 -15.39570 -14.81692 -14.30979 -13.86943 -13.56235 -12.86404 -12.75727 -12.42935 -12.21414 -11.99338 -11.66843 -11.40997 -11.08123 -10.96130 -10.76656 -10.52344 -10.36964 -9.83360 -9.49885 -9.35915 -9.30721 -8.77147 -7.80093 -6.87299 -5.71818 -3.04172 2.38436 3.13683 3.43080 3.47064 3.48300 3.70471 4.49606 5.12951 5.21336 5.31473 5.48847 5.54417 5.66595 5.75113 5.89071 6.01977 6.14911 6.27176 6.31687 6.38448 6.46930 6.56256 6.59259 6.71261 6.87507 6.99490 7.03586 7.27193 7.38072 7.63418 7.89309 8.03414 9.10220 9.74902 10.60843 11.44822 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.012124 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.480218 B = 2308.979097 C = 3088.963698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.113 4.113 4 C 0.169 3.831 5 N -0.594 5.594 6 C -0.212 4.212 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.922 5.922 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.209 3.791 15 H 0.077 0.923 16 C 0.037 3.963 17 C -0.244 4.244 18 C -0.220 4.220 19 C -0.065 4.065 20 O -0.143 6.143 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.253 0.747 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 5.447 7.633 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.170 4.170 4 C 0.044 3.956 5 N -0.318 5.318 6 C -0.339 4.339 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.569 5.569 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.101 3.899 15 H 0.094 0.906 16 C -0.017 4.017 17 C -0.264 4.264 18 C -0.239 4.239 19 C -0.133 4.133 20 O -0.037 6.037 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.100 5.314 7.189 10.292 hybrid contribution 0.872 -0.496 0.411 1.084 sum -4.228 4.817 7.600 9.942 Atomic orbital electron populations 1.21721 0.95275 1.01424 1.00884 1.22832 0.93509 0.96106 0.98134 1.21401 1.01927 0.93847 0.99835 1.22407 0.88198 0.92305 0.92655 1.45879 1.10489 1.75176 1.00213 1.18898 0.87344 1.34993 0.92709 0.90514 1.24728 0.98420 1.01930 0.95142 1.69805 1.36947 1.53696 0.96436 0.86231 0.84323 0.78909 0.76503 1.21269 1.21592 1.21113 1.21130 0.90385 0.92757 0.85605 0.90642 1.23279 0.83693 0.97501 0.97194 1.21436 1.02202 1.08607 0.94159 1.21640 0.95384 1.06014 1.00874 1.23955 1.01133 1.03715 0.84509 1.84270 1.32394 1.54542 1.32445 0.93265 0.92803 0.92687 0.91341 0.93390 0.93839 0.95249 0.90498 0.93662 0.84374 0.84501 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.21 37.16 0.34 -1.71 16 2 C -0.10 -2.00 1.35 -153.58 -0.21 -2.21 16 3 C -0.11 -2.11 8.13 37.16 0.30 -1.81 16 4 C 0.17 3.97 6.61 -2.97 -0.02 3.95 16 5 N -0.59 -15.22 3.41 -171.33 -0.58 -15.80 16 6 C -0.21 -6.02 10.21 -15.06 -0.15 -6.17 16 7 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 8 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 9 N -0.92 -27.38 11.38 55.49 0.63 -26.75 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.21 4.41 4.28 -68.02 -0.29 4.12 16 15 H 0.08 1.52 8.10 -51.93 -0.42 1.09 16 16 C 0.04 0.74 4.91 -35.63 -0.17 0.57 16 17 C -0.24 -4.26 10.81 -39.70 -0.43 -4.69 16 18 C -0.22 -3.49 10.91 -39.70 -0.43 -3.92 16 19 C -0.06 -1.08 12.09 29.41 0.36 -0.73 16 20 O -0.14 -3.03 10.09 5.71 0.06 -2.98 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.81 7.94 -51.93 -0.41 0.39 16 24 H 0.07 1.50 7.99 -51.93 -0.42 1.09 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.77 7.46 -51.93 -0.39 0.38 16 27 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 28 H 0.08 2.00 7.11 -51.93 -0.37 1.63 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 271.06 15.07 4.08 4.08 Total: -1.00 -31.04 271.06 -6.14 -37.18 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.50 Total: -0.49 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.81 Total: -12.87 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.05 Total: -42.55 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: 0.06 Total: -2.98 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.04 -6.14 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.709 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds