Wall clock time and date at job start Sun Mar 29 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 112.93924 * 2 1 4 4 C 1.53950 * 113.74155 * 228.26927 * 2 1 3 5 5 N 1.47581 * 86.11155 * 222.04515 * 4 2 1 6 6 C 1.36935 * 134.48953 * 204.63627 * 5 4 2 7 7 H 1.07994 * 120.00205 * 180.02562 * 6 5 4 8 8 C 1.38815 * 119.99747 * 0.02562 * 6 5 4 9 9 N 1.31615 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99806 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46908 * 59.99668 * 10 8 6 12 12 H 1.48500 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47303 * 300.00110 * 10 8 6 14 14 C 1.47583 * 91.01883 * 24.64142 * 5 4 2 15 15 H 1.09007 * 113.86845 * 89.67060 * 14 5 4 16 16 C 1.50694 * 113.76804 * 221.05491 * 14 5 4 17 17 C 1.34515 * 125.78835 * 196.49105 * 16 14 5 18 18 C 1.41385 * 106.84000 * 179.97438 * 17 16 14 19 19 C 1.34507 * 106.84104 * 0.02562 * 18 17 16 20 20 O 1.34300 * 108.42410 * 359.97438 * 19 18 17 21 21 H 1.08993 * 109.47171 * 288.40417 * 1 2 3 22 22 H 1.08999 * 109.47062 * 48.40787 * 1 2 3 23 23 H 1.09000 * 109.46843 * 168.40758 * 1 2 3 24 24 H 1.08998 * 109.47021 * 191.58891 * 3 2 1 25 25 H 1.08991 * 109.47762 * 311.59304 * 3 2 1 26 26 H 1.08997 * 109.46930 * 71.59631 * 3 2 1 27 27 H 1.09000 * 113.76835 * 336.34847 * 4 2 1 28 28 H 1.08996 * 113.76326 * 107.74190 * 4 2 1 29 29 H 0.97000 * 119.99835 * 179.97438 * 9 8 6 30 30 H 1.08001 * 126.57671 * 0.25194 * 17 16 14 31 31 H 1.07995 * 126.57686 * 179.97438 * 18 17 16 32 32 H 1.08001 * 125.78820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1264 1.4090 0.0000 4 6 2.1499 -0.9380 -1.0517 5 7 3.1105 -1.3199 0.0016 6 6 4.3824 -1.8274 0.0022 7 1 4.8838 -2.0267 0.9377 8 6 5.0272 -2.0856 -1.1997 9 7 4.4159 -1.8432 -2.3398 10 14 6.7625 -2.7772 -1.1988 11 1 6.7734 -4.0860 -0.4973 12 1 7.2222 -2.9625 -2.5987 13 1 7.6712 -1.8334 -0.4997 14 6 2.1499 -0.9354 1.0539 15 1 1.4896 -1.7449 1.3656 16 6 2.7792 -0.2098 2.2151 17 6 2.2194 -0.0256 3.4243 18 6 3.1518 0.6996 4.2012 19 6 4.2254 0.9156 3.4201 20 8 3.9942 0.3624 2.2184 21 1 -0.3633 0.3244 0.9750 22 1 -0.3633 0.6822 -0.7686 23 1 -0.3633 -1.0067 -0.2065 24 1 3.1951 1.3512 -0.2064 25 1 1.6399 2.0095 -0.7685 26 1 1.9692 1.8700 0.9751 27 1 1.4904 -1.7492 -1.3599 28 1 2.6050 -0.4151 -1.8928 29 1 4.8666 -2.0233 -3.1796 30 1 1.2463 -0.3699 3.7422 31 1 3.0259 1.0195 5.2249 32 1 5.1214 1.4443 3.7102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602926534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:48 Heat of formation + Delta-G solvation = 47.714304 kcal Electronic energy + Delta-G solvation = -15571.824717 eV Core-core repulsion = 13114.258993 eV Total energy + Delta-G solvation = -2457.565724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.33548 -40.28927 -34.73013 -33.70539 -32.18096 -30.86368 -28.28783 -27.99679 -26.16027 -23.57469 -22.35500 -21.46171 -19.33165 -18.91206 -17.74733 -16.96577 -16.69258 -15.86431 -15.70770 -15.16468 -14.42442 -14.24461 -14.08757 -13.50331 -13.31408 -13.18439 -13.04317 -12.94486 -12.75545 -12.53512 -12.33990 -11.94683 -11.65439 -11.36975 -11.01966 -10.86169 -10.64311 -9.22454 -8.87376 -7.87988 -5.20289 0.98845 1.41545 1.44764 1.50875 1.83848 2.33097 2.50692 3.34570 3.41048 3.62709 4.00297 4.19620 4.31063 4.33828 4.43458 4.53171 4.72379 4.87898 5.00226 5.03542 5.09205 5.17714 5.21490 5.27004 5.32906 5.33853 5.40144 5.59264 5.71343 5.84434 5.96998 6.51654 6.95291 7.62452 8.56967 9.28096 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.012124 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.480218 B = 2308.979097 C = 3088.963698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.102 4.102 4 C 0.164 3.836 5 N -0.622 5.622 6 C -0.214 4.214 7 H 0.068 0.932 8 C -0.065 4.065 9 N -0.951 5.951 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.207 3.793 15 H 0.087 0.913 16 C -0.004 4.004 17 C -0.228 4.228 18 C -0.215 4.215 19 C -0.072 4.072 20 O -0.183 6.183 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.248 0.752 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 6.245 9.811 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.159 4.159 4 C 0.039 3.961 5 N -0.346 5.346 6 C -0.343 4.343 7 H 0.086 0.914 8 C -0.257 4.257 9 N -0.601 5.601 10 Si 0.800 3.200 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.100 3.900 15 H 0.104 0.896 16 C -0.056 4.056 17 C -0.248 4.248 18 C -0.234 4.234 19 C -0.139 4.139 20 O -0.078 6.078 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.182 0.818 31 H 0.191 0.809 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.122 6.119 9.407 12.783 hybrid contribution 1.169 -0.695 -0.149 1.368 sum -4.954 5.424 9.258 11.818 Atomic orbital electron populations 1.21671 0.91497 1.02427 1.02888 1.22638 0.96220 0.94919 0.94764 1.21286 0.99307 0.94165 1.01171 1.22356 0.88130 0.93075 0.92496 1.46148 1.10579 1.75169 1.02751 1.19085 0.89037 1.33839 0.92334 0.91393 1.25486 1.02082 1.03233 0.94947 1.69984 1.38191 1.55320 0.96577 0.85267 0.80158 0.78362 0.76262 1.20548 1.21692 1.20721 1.21303 0.89526 0.93300 0.85827 0.89631 1.23070 0.84515 0.99970 0.98053 1.21813 1.03081 1.07000 0.92900 1.22055 0.94234 1.04927 1.02179 1.24765 1.02779 1.03105 0.83296 1.84218 1.33195 1.55674 1.34753 0.90910 0.91122 0.92244 0.95593 0.91261 0.92525 0.95816 0.94030 0.94343 0.81846 0.80909 0.76053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.21 71.99 0.66 -2.83 16 2 C -0.08 -3.17 1.35 -51.52 -0.07 -3.23 16 3 C -0.10 -3.76 8.13 71.98 0.59 -3.18 16 4 C 0.16 7.96 6.61 86.48 0.57 8.53 16 5 N -0.62 -32.74 3.41 -695.97 -2.37 -35.11 16 6 C -0.21 -12.55 10.21 84.03 0.86 -11.69 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 8 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 9 N -0.95 -58.75 11.38 21.65 0.25 -58.50 16 10 Si 0.97 47.74 29.55 68.60 2.03 49.77 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 14 C 0.21 8.63 4.28 44.34 0.19 8.82 16 15 H 0.09 3.34 8.10 -2.38 -0.02 3.32 16 16 C 0.00 -0.16 4.91 24.83 0.12 -0.03 16 17 C -0.23 -7.25 10.81 22.19 0.24 -7.01 16 18 C -0.22 -6.04 10.91 22.19 0.24 -5.80 16 19 C -0.07 -2.26 12.09 66.97 0.81 -1.45 16 20 O -0.18 -7.69 10.09 -2.50 -0.03 -7.72 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.59 7.94 -2.39 -0.02 1.58 16 24 H 0.02 1.15 7.99 -2.39 -0.02 1.13 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.92 7.46 -2.39 -0.02 1.90 16 27 H 0.02 1.16 7.96 -2.39 -0.02 1.14 16 28 H 0.04 2.28 7.11 -2.39 -0.02 2.26 16 29 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.22 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -69.55 271.06 5.64 -63.91 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.09 Total: 8.89 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.68 Total: -21.24 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -2.12 Total: -93.61 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.03 Total: -7.72 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -69.55 5.64 -63.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.623 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds