Wall clock time and date at job start Sun Mar 29 2020 21:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 113.41758 * 2 1 4 4 C 1.53502 * 114.20493 * 226.79772 * 2 1 3 5 5 N 1.47066 * 87.98344 * 272.48244 * 4 2 1 6 6 C 1.36938 * 136.05613 * 152.91815 * 5 4 2 7 7 H 1.07993 * 120.00304 * 179.97438 * 6 5 4 8 8 C 1.38816 * 119.99887 * 359.94602 * 6 5 4 9 9 N 1.31621 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99877 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47015 * 60.00062 * 10 8 6 12 12 H 1.48498 * 109.46998 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46865 * 299.99854 * 10 8 6 14 14 C 1.47065 * 87.88574 * 332.87697 * 5 4 2 15 15 H 1.08992 * 113.46951 * 272.27890 * 14 5 4 16 16 C 1.50706 * 113.46277 * 141.90014 * 14 5 4 17 17 C 1.34515 * 125.78525 * 159.22454 * 16 14 5 18 18 C 1.41378 * 106.83874 * 179.88891 * 17 16 14 19 19 C 1.34513 * 106.84173 * 0.37223 * 18 17 16 20 20 O 1.34300 * 108.42109 * 359.77323 * 19 18 17 21 21 H 1.08995 * 109.46824 * 286.80335 * 1 2 3 22 22 H 1.09011 * 109.46691 * 46.79953 * 1 2 3 23 23 H 1.09000 * 109.47520 * 166.79716 * 1 2 3 24 24 H 1.09008 * 109.47254 * 193.20175 * 3 2 1 25 25 H 1.09004 * 109.46867 * 313.19873 * 3 2 1 26 26 H 1.09000 * 109.47154 * 73.19981 * 3 2 1 27 27 H 1.09001 * 113.46998 * 157.70086 * 4 2 1 28 28 H 1.08997 * 113.47134 * 27.26282 * 4 2 1 29 29 H 0.96993 * 120.00131 * 179.97438 * 9 8 6 30 30 H 1.08002 * 126.58282 * 0.02562 * 17 16 14 31 31 H 1.07997 * 126.58154 * 180.16157 * 18 17 16 32 32 H 1.08005 * 125.78944 * 179.75455 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1380 1.4040 0.0000 4 6 2.1593 -0.9585 -1.0206 5 7 2.0800 -2.0144 0.0000 6 6 1.9782 -3.3800 0.0001 7 1 1.9380 -3.9184 0.9353 8 6 1.9260 -4.0721 -1.2021 9 7 1.9740 -3.4158 -2.3420 10 14 1.7863 -5.9349 -1.2021 11 1 0.5403 -6.3378 -0.5018 12 1 1.7484 -6.4284 -2.6021 13 1 2.9586 -6.5191 -0.5023 14 6 2.1594 -0.9584 1.0205 15 1 3.1810 -0.6940 1.2931 16 6 1.2846 -1.2164 2.2203 17 6 1.4364 -0.6648 3.4377 18 6 0.4027 -1.1805 4.2528 19 6 -0.3139 -2.0228 3.4870 20 8 0.2248 -2.0406 2.2570 21 1 -0.3633 0.2971 0.9838 22 1 -0.3633 0.7036 -0.7492 23 1 -0.3634 -1.0005 -0.2347 24 1 3.2006 1.3398 -0.2347 25 1 1.6369 2.0169 -0.7492 26 1 2.0099 1.8554 0.9838 27 1 3.1810 -0.6933 -1.2924 28 1 1.5267 -1.1451 -1.8883 29 1 1.9379 -3.8994 -3.1820 30 1 2.1999 0.0390 3.7348 31 1 0.2248 -0.9461 5.2919 32 1 -1.1761 -2.5889 3.8072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602926535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:54 Heat of formation + Delta-G solvation = 70.084741 kcal Electronic energy + Delta-G solvation = -15571.623658 eV Core-core repulsion = 13115.027989 eV Total energy + Delta-G solvation = -2456.595669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.93450 -38.77947 -32.75082 -32.30785 -30.50409 -29.35513 -26.82200 -26.21242 -24.42505 -21.76319 -20.98742 -19.98529 -17.80244 -17.10505 -16.15628 -15.41470 -14.81158 -14.31512 -13.89574 -13.54670 -12.83698 -12.82464 -12.41568 -12.21336 -11.97060 -11.67598 -11.40971 -11.09509 -10.93740 -10.76425 -10.57266 -10.38997 -9.89199 -9.56262 -9.32432 -9.18086 -8.79419 -7.80116 -6.88659 -5.73153 -3.05742 2.38721 3.14166 3.42530 3.46375 3.47655 3.70733 4.48709 5.13070 5.21987 5.32870 5.48039 5.54521 5.67015 5.74736 5.89480 6.00148 6.15027 6.26835 6.32182 6.38477 6.46389 6.56042 6.59291 6.71645 6.86068 7.00809 7.03514 7.24126 7.36349 7.61184 7.89094 8.01345 9.07903 9.73047 10.63339 11.43916 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.012076 C = 0.009064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.650524 B = 2318.066773 C = 3088.295755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.161 3.839 5 N -0.592 5.592 6 C -0.207 4.207 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.920 5.920 10 Si 0.911 3.089 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.211 3.789 15 H 0.075 0.925 16 C 0.035 3.965 17 C -0.245 4.245 18 C -0.220 4.220 19 C -0.065 4.065 20 O -0.144 6.144 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.254 0.746 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 7.389 7.675 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.190 4.190 4 C 0.035 3.965 5 N -0.316 5.316 6 C -0.334 4.334 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.103 3.897 15 H 0.092 0.908 16 C -0.018 4.018 17 C -0.264 4.264 18 C -0.239 4.239 19 C -0.133 4.133 20 O -0.037 6.037 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.514 6.834 7.233 10.264 hybrid contribution 0.103 -0.979 0.412 1.067 sum -2.410 5.855 7.645 9.927 Atomic orbital electron populations 1.21345 0.93053 1.02485 0.99809 1.22642 0.96343 0.93277 0.98856 1.21649 1.00414 0.95974 1.00924 1.22249 0.96897 0.83709 0.93626 1.45506 1.84639 1.00697 1.00757 1.18809 1.43044 0.78822 0.92743 0.90363 1.24746 1.02483 0.97885 0.95121 1.69815 1.56475 1.33995 0.96443 0.86210 0.78003 0.85101 0.76534 1.21080 1.21567 1.21229 1.21116 0.93382 0.90211 0.85014 0.90827 1.23356 0.89038 0.92120 0.97331 1.21455 1.03624 1.07814 0.93547 1.21642 0.98900 1.02718 1.00645 1.23952 1.01692 1.03964 0.83730 1.84256 1.36277 1.52353 1.30833 0.93864 0.93429 0.91202 0.92665 0.92757 0.93190 0.95423 0.90609 0.93643 0.84386 0.84510 0.79204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 8.19 37.16 0.30 -1.76 16 2 C -0.11 -2.10 1.43 -153.99 -0.22 -2.32 16 3 C -0.13 -1.99 9.31 37.16 0.35 -1.65 16 4 C 0.16 3.77 6.50 -8.51 -0.06 3.71 16 5 N -0.59 -15.22 3.42 -178.26 -0.61 -15.83 16 6 C -0.21 -5.88 10.30 -15.06 -0.16 -6.03 16 7 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 8 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 9 N -0.92 -27.36 11.51 55.49 0.64 -26.72 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.21 4.45 4.06 -73.55 -0.30 4.16 16 15 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 16 C 0.03 0.71 4.99 -35.62 -0.18 0.53 16 17 C -0.24 -4.29 10.81 -39.70 -0.43 -4.72 16 18 C -0.22 -3.50 10.91 -39.70 -0.43 -3.94 16 19 C -0.06 -1.09 12.09 29.42 0.36 -0.73 16 20 O -0.14 -3.04 10.04 5.72 0.06 -2.98 16 21 H 0.04 0.77 7.44 -51.93 -0.39 0.39 16 22 H 0.05 0.79 8.13 -51.92 -0.42 0.37 16 23 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 24 H 0.05 0.80 7.89 -51.92 -0.41 0.39 16 25 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.65 7.93 -51.93 -0.41 0.24 16 28 H 0.08 1.98 7.10 -51.93 -0.37 1.61 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.19 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -31.05 271.04 -6.20 -37.25 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.49 Total: -0.36 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.86 Total: -13.03 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.03 Total: -42.55 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: 0.06 Total: -2.98 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.05 -6.20 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.339 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds