Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 113.41758 * 2 1 4 4 C 1.53502 * 114.20493 * 226.79772 * 2 1 3 5 5 N 1.47066 * 87.98344 * 272.48244 * 4 2 1 6 6 C 1.36938 * 136.05613 * 152.91815 * 5 4 2 7 7 H 1.07993 * 120.00304 * 179.97438 * 6 5 4 8 8 C 1.38816 * 119.99887 * 359.94602 * 6 5 4 9 9 N 1.31621 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99877 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47015 * 60.00062 * 10 8 6 12 12 H 1.48498 * 109.46998 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46865 * 299.99854 * 10 8 6 14 14 C 1.47065 * 87.88574 * 332.87697 * 5 4 2 15 15 H 1.08992 * 113.46951 * 272.27890 * 14 5 4 16 16 C 1.50706 * 113.46277 * 141.90014 * 14 5 4 17 17 C 1.34515 * 125.78525 * 159.22454 * 16 14 5 18 18 C 1.41378 * 106.83874 * 179.88891 * 17 16 14 19 19 C 1.34513 * 106.84173 * 0.37223 * 18 17 16 20 20 O 1.34300 * 108.42109 * 359.77323 * 19 18 17 21 21 H 1.08995 * 109.46824 * 286.80335 * 1 2 3 22 22 H 1.09011 * 109.46691 * 46.79953 * 1 2 3 23 23 H 1.09000 * 109.47520 * 166.79716 * 1 2 3 24 24 H 1.09008 * 109.47254 * 193.20175 * 3 2 1 25 25 H 1.09004 * 109.46867 * 313.19873 * 3 2 1 26 26 H 1.09000 * 109.47154 * 73.19981 * 3 2 1 27 27 H 1.09001 * 113.46998 * 157.70086 * 4 2 1 28 28 H 1.08997 * 113.47134 * 27.26282 * 4 2 1 29 29 H 0.96993 * 120.00131 * 179.97438 * 9 8 6 30 30 H 1.08002 * 126.58282 * 0.02562 * 17 16 14 31 31 H 1.07997 * 126.58154 * 180.16157 * 18 17 16 32 32 H 1.08005 * 125.78944 * 179.75455 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1380 1.4040 0.0000 4 6 2.1593 -0.9585 -1.0206 5 7 2.0800 -2.0144 0.0000 6 6 1.9782 -3.3800 0.0001 7 1 1.9380 -3.9184 0.9353 8 6 1.9260 -4.0721 -1.2021 9 7 1.9740 -3.4158 -2.3420 10 14 1.7863 -5.9349 -1.2021 11 1 0.5403 -6.3378 -0.5018 12 1 1.7484 -6.4284 -2.6021 13 1 2.9586 -6.5191 -0.5023 14 6 2.1594 -0.9584 1.0205 15 1 3.1810 -0.6940 1.2931 16 6 1.2846 -1.2164 2.2203 17 6 1.4364 -0.6648 3.4377 18 6 0.4027 -1.1805 4.2528 19 6 -0.3139 -2.0228 3.4870 20 8 0.2248 -2.0406 2.2570 21 1 -0.3633 0.2971 0.9838 22 1 -0.3633 0.7036 -0.7492 23 1 -0.3634 -1.0005 -0.2347 24 1 3.2006 1.3398 -0.2347 25 1 1.6369 2.0169 -0.7492 26 1 2.0099 1.8554 0.9838 27 1 3.1810 -0.6933 -1.2924 28 1 1.5267 -1.1451 -1.8883 29 1 1.9379 -3.8994 -3.1820 30 1 2.1999 0.0390 3.7348 31 1 0.2248 -0.9461 5.2919 32 1 -1.1761 -2.5889 3.8072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602926535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = 51.196675 kcal Electronic energy + Delta-G solvation = -15572.442706 eV Core-core repulsion = 13115.027989 eV Total energy + Delta-G solvation = -2457.414717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.34678 -40.45933 -34.73671 -33.71087 -32.23614 -30.84522 -28.35969 -28.04298 -26.02799 -23.66291 -22.36378 -21.42667 -19.36104 -18.95202 -17.76054 -16.98582 -16.68506 -15.86825 -15.72876 -15.14344 -14.48123 -14.24565 -14.05795 -13.50820 -13.31095 -13.17203 -13.05551 -12.93777 -12.75884 -12.51838 -12.35329 -11.98519 -11.68761 -11.43582 -10.91214 -10.86530 -10.63737 -9.22716 -8.88703 -7.89151 -5.21665 0.99009 1.41602 1.45063 1.51122 1.83854 2.33424 2.49965 3.33506 3.47371 3.57601 4.01214 4.18325 4.30694 4.33690 4.42320 4.52490 4.71481 4.87703 4.99813 5.02755 5.08766 5.17517 5.21078 5.25724 5.31637 5.34228 5.40576 5.56168 5.70901 5.84278 5.95418 6.51216 6.92826 7.60527 8.60089 9.27660 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.012076 C = 0.009064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.650524 B = 2318.066773 C = 3088.295755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.089 4.089 3 C -0.124 4.124 4 C 0.156 3.844 5 N -0.622 5.622 6 C -0.209 4.209 7 H 0.070 0.930 8 C -0.065 4.065 9 N -0.951 5.951 10 Si 0.973 3.027 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.208 3.792 15 H 0.084 0.916 16 C -0.006 4.006 17 C -0.230 4.230 18 C -0.216 4.216 19 C -0.072 4.072 20 O -0.183 6.183 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.025 0.975 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.024 0.976 28 H 0.039 0.961 29 H 0.248 0.752 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 8.589 9.845 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.182 4.182 4 C 0.031 3.969 5 N -0.346 5.346 6 C -0.338 4.338 7 H 0.088 0.912 8 C -0.258 4.258 9 N -0.600 5.600 10 Si 0.801 3.199 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.102 3.898 15 H 0.102 0.898 16 C -0.058 4.058 17 C -0.249 4.249 18 C -0.234 4.234 19 C -0.139 4.139 20 O -0.078 6.078 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.770 8.064 9.442 12.722 hybrid contribution 0.150 -1.317 -0.147 1.334 sum -2.620 6.747 9.294 11.780 Atomic orbital electron populations 1.21232 0.92936 1.00441 1.01040 1.22491 0.96242 0.94809 0.95441 1.21610 1.00566 0.93096 1.02893 1.22242 0.96365 0.85042 0.93262 1.45746 1.84872 1.00637 1.03353 1.18993 1.41717 0.80665 0.92394 0.91202 1.25516 1.03305 1.02041 0.94900 1.69995 1.58232 1.35175 0.96605 0.85236 0.78097 0.80243 0.76299 1.20647 1.21673 1.20469 1.21254 0.94315 0.88903 0.85353 0.89849 1.23148 0.90123 0.94452 0.98055 1.21830 1.03865 1.06832 0.92410 1.22055 0.97708 1.01659 1.02024 1.24769 1.02431 1.04233 0.82476 1.84206 1.37107 1.53334 1.33152 0.92668 0.91225 0.95557 0.92092 0.91050 0.90910 0.95815 0.94236 0.94318 0.81931 0.80938 0.75996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.69 8.19 71.98 0.59 -3.10 16 2 C -0.09 -3.33 1.43 -51.85 -0.07 -3.40 16 3 C -0.12 -3.39 9.31 71.98 0.67 -2.72 16 4 C 0.16 7.55 6.50 83.18 0.54 8.09 16 5 N -0.62 -32.82 3.42 -717.90 -2.46 -35.28 16 6 C -0.21 -12.26 10.30 84.03 0.87 -11.39 16 7 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 8 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 9 N -0.95 -58.77 11.51 21.65 0.25 -58.52 16 10 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 C 0.21 8.72 4.06 41.05 0.17 8.89 16 15 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 16 C -0.01 -0.23 4.99 24.83 0.12 -0.10 16 17 C -0.23 -7.35 10.81 22.19 0.24 -7.11 16 18 C -0.22 -6.08 10.91 22.19 0.24 -5.84 16 19 C -0.07 -2.25 12.09 66.97 0.81 -1.44 16 20 O -0.18 -7.65 10.04 -2.43 -0.02 -7.67 16 21 H 0.05 1.90 7.44 -2.39 -0.02 1.88 16 22 H 0.07 2.22 8.13 -2.38 -0.02 2.21 16 23 H 0.03 1.18 7.92 -2.39 -0.02 1.16 16 24 H 0.06 1.61 7.89 -2.38 -0.02 1.59 16 25 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.02 1.15 7.93 -2.39 -0.02 1.13 16 28 H 0.04 2.16 7.10 -2.39 -0.02 2.15 16 29 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 30 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.22 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -69.61 271.04 5.52 -64.09 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.09 Total: 9.22 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.64 Total: -21.50 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -2.21 Total: -93.80 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.02 Total: -7.67 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -69.61 5.52 -64.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.286 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds