Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50699 * 119.99922 * 2 1 4 4 C 1.31005 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.50692 * 120.00370 * 174.82520 * 4 2 1 6 6 N 1.46504 * 109.47073 * 125.25536 * 5 4 2 7 7 C 1.35312 * 125.86752 * 124.71535 * 6 5 4 8 8 C 1.35353 * 106.17230 * 179.90610 * 7 6 5 9 9 C 1.50703 * 126.74911 * 180.12706 * 8 7 6 10 10 C 1.50701 * 109.47096 * 125.24922 * 9 8 7 11 11 H 1.07995 * 120.00016 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99935 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00090 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47053 * 59.99974 * 14 12 10 16 16 H 1.48500 * 109.47332 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47115 * 300.00540 * 14 12 10 18 18 N 1.33768 * 106.50010 * 0.35650 * 8 7 6 19 19 N 1.28638 * 108.88414 * 359.76810 * 18 8 7 20 20 H 1.09001 * 109.46995 * 270.00086 * 1 2 3 21 21 H 1.08993 * 109.47102 * 30.00365 * 1 2 3 22 22 H 1.08999 * 109.47288 * 150.00632 * 1 2 3 23 23 H 1.09001 * 109.46956 * 244.80524 * 3 2 1 24 24 H 1.08996 * 109.47504 * 4.80225 * 3 2 1 25 25 H 1.09004 * 109.47272 * 124.81041 * 3 2 1 26 26 H 1.08008 * 119.99493 * 354.55899 * 4 2 1 27 27 H 1.08998 * 109.47452 * 245.25776 * 5 4 2 28 28 H 1.09009 * 109.46909 * 5.26245 * 5 4 2 29 29 H 1.07990 * 126.91197 * 0.02562 * 7 6 5 30 30 H 1.09006 * 109.47096 * 245.24842 * 9 8 7 31 31 H 1.09000 * 109.47220 * 5.24478 * 9 8 7 32 32 H 0.96992 * 119.99825 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6644 -1.1372 -0.1172 6 7 4.2407 -1.8832 1.0043 7 6 5.0868 -2.9346 0.9058 8 6 5.3675 -3.3127 2.1748 9 6 6.2701 -4.4420 2.6003 10 6 7.3197 -3.9172 3.5459 11 1 7.3317 -2.8707 3.8123 12 6 8.2640 -4.7732 4.0716 13 7 8.2491 -6.0478 3.7475 14 14 9.5654 -4.1226 5.2431 15 1 8.9071 -3.5370 6.4384 16 1 10.4547 -5.2354 5.6625 17 1 10.3693 -3.0780 4.5591 18 7 4.6823 -2.4900 2.9767 19 7 4.0249 -1.6546 2.2525 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5137 23 1 2.8210 1.4010 -0.9299 24 1 1.5553 2.1318 0.0860 25 1 2.9502 1.3265 0.8438 26 1 1.6257 -2.0677 0.0896 27 1 3.9545 -1.6100 -1.0554 28 1 4.0322 -0.1112 -0.0983 29 1 5.4637 -3.3809 -0.0024 30 1 5.6803 -5.2093 3.1019 31 1 6.7536 -4.8712 1.7228 32 1 8.9136 -6.6500 4.1170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603177788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = 99.166662 kcal Electronic energy + Delta-G solvation = -14211.412409 eV Core-core repulsion = 11788.370578 eV Total energy + Delta-G solvation = -2423.041831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.42596 -37.28639 -34.07689 -32.99195 -30.98397 -29.31340 -28.01903 -27.29200 -24.91780 -23.32757 -21.18436 -20.11058 -18.26633 -16.82905 -16.15948 -15.71071 -15.02668 -14.49519 -14.25864 -14.15852 -13.86111 -12.95295 -12.67912 -12.46532 -12.17415 -12.04331 -11.81607 -11.66972 -11.26688 -10.93198 -10.69295 -10.61402 -10.08818 -9.64888 -9.40606 -9.26895 -9.00304 -8.39220 -8.06711 -5.95571 -3.95981 1.74086 2.31380 3.07328 3.40958 3.43545 3.46892 3.57585 4.45331 4.54295 4.61403 4.74472 4.98954 5.10104 5.27810 5.29096 5.36462 5.41619 5.50131 5.58645 5.72788 5.79084 5.90510 6.14427 6.30713 6.42486 6.57441 7.19109 7.27175 7.57229 7.66970 8.02274 8.41592 9.07272 9.39090 9.66594 11.15605 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.065133 B = 0.005025 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.783304 B = 5571.182057 C = 5729.940691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.185 4.185 5 C 0.149 3.851 6 N -0.301 5.301 7 C -0.086 4.086 8 C 0.033 3.967 9 C 0.092 3.908 10 C -0.503 4.503 11 H 0.058 0.942 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.278 1.278 18 N -0.265 5.265 19 N -0.104 5.104 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.181 0.819 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 10.824 -11.913 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.101 4.101 3 C -0.185 4.185 4 C -0.203 4.203 5 C 0.028 3.972 6 N -0.097 5.097 7 C -0.235 4.235 8 C -0.104 4.104 9 C 0.054 3.946 10 C -0.542 4.542 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.204 1.204 18 N -0.132 5.132 19 N -0.083 5.083 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.198 0.802 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.488 11.555 -10.878 20.194 hybrid contribution 1.273 -0.392 -0.334 1.373 sum -11.215 11.163 -11.212 19.393 Atomic orbital electron populations 1.20880 0.91698 1.02456 1.02531 1.21675 0.96086 0.94870 0.97428 1.20968 1.00321 0.94731 1.02438 1.22563 0.93918 0.98623 1.05232 1.20997 0.91878 0.97531 0.86773 1.47227 1.32121 1.23194 1.07117 1.23392 1.02539 0.95761 1.01766 1.23016 0.99020 0.99943 0.88434 1.17716 0.91281 0.88508 0.97123 1.21016 1.11497 0.95324 1.26329 0.92358 1.24970 0.97891 0.94815 0.96725 1.69939 1.35962 1.03192 1.44808 0.86575 0.81265 0.78228 0.81481 1.20097 1.21324 1.20358 1.75077 1.08359 1.03642 1.26118 1.78190 1.21307 1.21901 0.86893 0.91007 0.91622 0.91694 0.91314 0.91662 0.90687 0.86561 0.87512 0.88473 0.80227 0.94360 0.94593 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.96 36.00 0.36 -0.58 16 2 C -0.10 -0.95 6.05 -101.07 -0.61 -1.56 16 3 C -0.13 -1.06 8.53 36.01 0.31 -0.76 16 4 C -0.18 -2.05 9.21 -36.03 -0.33 -2.38 16 5 C 0.15 1.74 6.71 -5.20 -0.03 1.70 16 6 N -0.30 -5.22 3.43 -62.44 -0.21 -5.44 16 7 C -0.09 -1.62 11.49 -17.05 -0.20 -1.82 16 8 C 0.03 0.79 6.44 -82.78 -0.53 0.25 16 9 C 0.09 2.47 5.55 -29.03 -0.16 2.31 16 10 C -0.50 -14.80 9.09 -34.44 -0.31 -15.11 16 11 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 N -0.26 -6.55 12.40 33.29 0.41 -6.13 16 19 N -0.10 -2.21 12.92 60.35 0.78 -1.43 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 22 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 23 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 24 H 0.06 0.46 7.98 -51.93 -0.41 0.04 16 25 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 26 H 0.12 1.35 8.05 -52.48 -0.42 0.93 16 27 H 0.11 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.10 1.01 5.79 -51.92 -0.30 0.71 16 29 H 0.18 2.68 8.06 -52.49 -0.42 2.25 16 30 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 281.45 15.07 4.24 4.24 Total: -1.00 -33.74 281.45 -5.11 -38.85 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.43 Total: -4.80 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.61 Total: -16.38 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.71 Total: -39.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.74 -5.11 -38.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603177788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.020 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds