Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50699 * 119.99922 * 2 1 4 4 C 1.31005 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.50692 * 120.00370 * 174.82520 * 4 2 1 6 6 N 1.46504 * 109.47073 * 125.25536 * 5 4 2 7 7 C 1.35312 * 125.86752 * 124.71535 * 6 5 4 8 8 C 1.35353 * 106.17230 * 179.90610 * 7 6 5 9 9 C 1.50703 * 126.74911 * 180.12706 * 8 7 6 10 10 C 1.50701 * 109.47096 * 125.24922 * 9 8 7 11 11 H 1.07995 * 120.00016 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99935 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00090 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47053 * 59.99974 * 14 12 10 16 16 H 1.48500 * 109.47332 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47115 * 300.00540 * 14 12 10 18 18 N 1.33768 * 106.50010 * 0.35650 * 8 7 6 19 19 N 1.28638 * 108.88414 * 359.76810 * 18 8 7 20 20 H 1.09001 * 109.46995 * 270.00086 * 1 2 3 21 21 H 1.08993 * 109.47102 * 30.00365 * 1 2 3 22 22 H 1.08999 * 109.47288 * 150.00632 * 1 2 3 23 23 H 1.09001 * 109.46956 * 244.80524 * 3 2 1 24 24 H 1.08996 * 109.47504 * 4.80225 * 3 2 1 25 25 H 1.09004 * 109.47272 * 124.81041 * 3 2 1 26 26 H 1.08008 * 119.99493 * 354.55899 * 4 2 1 27 27 H 1.08998 * 109.47452 * 245.25776 * 5 4 2 28 28 H 1.09009 * 109.46909 * 5.26245 * 5 4 2 29 29 H 1.07990 * 126.91197 * 0.02562 * 7 6 5 30 30 H 1.09006 * 109.47096 * 245.24842 * 9 8 7 31 31 H 1.09000 * 109.47220 * 5.24478 * 9 8 7 32 32 H 0.96992 * 119.99825 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6644 -1.1372 -0.1172 6 7 4.2407 -1.8832 1.0043 7 6 5.0868 -2.9346 0.9058 8 6 5.3675 -3.3127 2.1748 9 6 6.2701 -4.4420 2.6003 10 6 7.3197 -3.9172 3.5459 11 1 7.3317 -2.8707 3.8123 12 6 8.2640 -4.7732 4.0716 13 7 8.2491 -6.0478 3.7475 14 14 9.5654 -4.1226 5.2431 15 1 8.9071 -3.5370 6.4384 16 1 10.4547 -5.2354 5.6625 17 1 10.3693 -3.0780 4.5591 18 7 4.6823 -2.4900 2.9767 19 7 4.0249 -1.6546 2.2525 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5137 23 1 2.8210 1.4010 -0.9299 24 1 1.5553 2.1318 0.0860 25 1 2.9502 1.3265 0.8438 26 1 1.6257 -2.0677 0.0896 27 1 3.9545 -1.6100 -1.0554 28 1 4.0322 -0.1112 -0.0983 29 1 5.4637 -3.3809 -0.0024 30 1 5.6803 -5.2093 3.1019 31 1 6.7536 -4.8712 1.7228 32 1 8.9136 -6.6500 4.1170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603177788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = 77.301161 kcal Electronic energy + Delta-G solvation = -14212.360568 eV Core-core repulsion = 11788.370578 eV Total energy + Delta-G solvation = -2423.989990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.00456 -38.15184 -35.76069 -34.74634 -32.85164 -30.40802 -29.20419 -28.66812 -25.93979 -25.39786 -22.67932 -21.73823 -19.12386 -18.54243 -17.98554 -17.03370 -16.53696 -15.93435 -15.51927 -15.19428 -14.77037 -14.53584 -14.28191 -13.72804 -13.34615 -13.28087 -12.95422 -12.78192 -12.66007 -12.54345 -12.42387 -12.10697 -11.89928 -11.67377 -11.35952 -10.82946 -10.57460 -9.91279 -9.75604 -8.18047 -6.26947 0.77426 0.90325 1.40627 1.44421 1.52217 1.78279 1.90115 2.45250 3.14573 3.56426 3.69172 3.88727 4.01918 4.21894 4.31737 4.36281 4.49727 4.66081 4.72845 4.82396 4.88164 4.92564 5.09148 5.10152 5.30277 5.45522 5.54648 5.61305 5.76381 5.77514 5.93444 6.23494 6.81032 7.39632 7.75070 8.92820 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.065133 B = 0.005025 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.783304 B = 5571.182057 C = 5729.940691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.210 4.210 5 C 0.138 3.862 6 N -0.281 5.281 7 C -0.056 4.056 8 C -0.010 4.010 9 C 0.103 3.897 10 C -0.525 4.525 11 H 0.044 0.956 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.268 1.268 18 N -0.313 5.313 19 N -0.116 5.116 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.144 0.856 28 H 0.114 0.886 29 H 0.225 0.775 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 12.341 -13.532 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.187 4.187 4 C -0.229 4.229 5 C 0.020 3.980 6 N -0.077 5.077 7 C -0.206 4.206 8 C -0.149 4.149 9 C 0.064 3.936 10 C -0.564 4.564 11 H 0.062 0.938 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.193 1.193 18 N -0.180 5.180 19 N -0.095 5.095 20 H 0.086 0.914 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.124 0.876 27 H 0.162 0.838 28 H 0.132 0.868 29 H 0.241 0.759 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.567 13.101 -12.512 22.049 hybrid contribution 1.163 -0.782 0.052 1.402 sum -11.405 12.319 -12.461 20.907 Atomic orbital electron populations 1.20957 0.90579 1.03717 1.02629 1.22007 0.97092 0.94989 0.94731 1.21035 1.00487 0.94482 1.02727 1.22479 0.93580 0.98851 1.08011 1.21597 0.92143 0.98202 0.86024 1.47694 1.30429 1.22278 1.07270 1.23810 1.00654 0.94753 1.01367 1.22688 1.00855 1.00667 0.90671 1.17381 0.90973 0.89015 0.96245 1.21255 1.12777 0.94848 1.27483 0.93783 1.25799 0.99932 0.95016 0.98209 1.70035 1.36813 1.04208 1.45696 0.85547 0.78598 0.78096 0.79063 1.20147 1.19984 1.19285 1.74982 1.09891 1.04998 1.28116 1.78059 1.21380 1.21574 0.88449 0.91363 0.89671 0.91249 0.89341 0.90182 0.92263 0.87569 0.83821 0.86808 0.75884 0.97547 0.94738 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.96 71.24 0.71 -0.94 16 2 C -0.09 -1.46 6.05 -16.49 -0.10 -1.56 16 3 C -0.13 -1.81 8.53 71.24 0.61 -1.20 16 4 C -0.21 -4.24 9.21 25.64 0.24 -4.01 16 5 C 0.14 2.81 6.71 85.63 0.57 3.38 16 6 N -0.28 -9.27 3.43 -351.47 -1.21 -10.48 16 7 C -0.06 -2.01 11.49 83.49 0.96 -1.05 16 8 C -0.01 -0.51 6.44 41.60 0.27 -0.24 16 9 C 0.10 5.68 5.55 29.10 0.16 5.84 16 10 C -0.53 -31.69 9.09 25.60 0.23 -31.45 16 11 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 14 Si 0.96 46.13 29.54 68.60 2.03 48.16 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 N -0.31 -15.86 12.40 -48.60 -0.60 -16.46 16 19 N -0.12 -4.90 12.92 37.02 0.48 -4.42 16 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 22 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 23 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 24 H 0.08 0.88 7.98 -2.39 -0.02 0.86 16 25 H 0.06 1.05 7.64 -2.39 -0.02 1.03 16 26 H 0.11 2.35 8.05 -2.91 -0.02 2.33 16 27 H 0.14 1.86 8.07 -2.39 -0.02 1.84 16 28 H 0.11 1.99 5.79 -2.38 -0.01 1.97 16 29 H 0.22 5.84 8.06 -2.92 -0.02 5.81 16 30 H 0.01 0.38 8.14 -2.38 -0.02 0.37 16 31 H 0.03 1.86 8.12 -2.39 -0.02 1.84 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.96 281.45 6.19 -68.78 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.09 Total: 0.74 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 4.11 Total: -30.25 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.05 Total: -87.42 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.96 6.19 -68.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603177788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.077 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds