Wall clock time and date at job start Sun Mar 29 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00487 * 2 1 4 4 C 1.52995 * 109.47255 * 124.99965 * 3 2 1 5 5 C 1.53002 * 109.47181 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47215 * 180.02562 * 5 4 3 7 7 C 1.35309 * 125.87027 * 124.97307 * 6 5 4 8 8 C 1.35353 * 106.17498 * 179.97438 * 7 6 5 9 9 C 1.50706 * 126.75076 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46793 * 124.99895 * 9 8 7 11 11 H 1.08001 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99507 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00130 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99689 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46973 * 119.99908 * 14 12 10 17 17 H 1.48501 * 109.47442 * 240.00147 * 14 12 10 18 18 N 1.33775 * 106.49785 * 359.97438 * 8 7 6 19 19 N 1.28637 * 108.88137 * 0.02562 * 18 8 7 20 20 H 1.07995 * 120.00433 * 180.02562 * 1 2 3 21 21 H 1.08007 * 119.99473 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.99000 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46658 * 4.99707 * 3 2 1 24 24 H 1.09004 * 109.46759 * 245.00326 * 3 2 1 25 25 H 1.09001 * 109.46985 * 59.99716 * 4 3 2 26 26 H 1.09007 * 109.47030 * 299.99912 * 4 3 2 27 27 H 1.08997 * 109.46834 * 59.99681 * 5 4 3 28 28 H 1.09007 * 109.46928 * 299.99805 * 5 4 3 29 29 H 1.08002 * 126.91313 * 0.02562 * 7 6 5 30 30 H 1.08997 * 109.46870 * 244.99788 * 9 8 7 31 31 H 1.09004 * 109.46999 * 5.00398 * 9 8 7 32 32 H 0.97003 * 119.99723 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7998 2.6582 1.1819 6 7 4.7305 2.6847 2.3130 7 6 6.0634 2.9048 2.2379 8 6 6.5279 2.8428 3.5077 9 6 7.9558 3.0216 3.9553 10 6 8.0227 4.1056 5.0001 11 1 7.1214 4.6139 5.3094 12 6 9.2347 4.4484 5.5611 13 7 10.3323 3.8298 5.1841 14 14 9.3176 5.7915 6.8567 15 1 7.9543 6.3262 7.1033 16 1 9.8639 5.2295 8.1180 17 1 10.2002 6.8861 6.3793 18 7 5.4702 2.5917 4.2873 19 7 4.4205 2.5034 3.5490 20 1 -0.5400 -0.9352 0.0004 21 1 -0.5399 0.9354 -0.0004 22 1 1.8499 -0.9354 0.0004 23 1 1.3587 2.1315 0.0895 24 1 2.6213 1.4024 -0.9315 25 1 3.7399 0.5063 1.0920 26 1 2.4773 1.2355 2.1130 27 1 3.0946 3.4845 1.2717 28 1 4.3576 2.7560 0.2505 29 1 6.6405 3.0931 1.3446 30 1 8.3239 2.0866 4.3777 31 1 8.5720 3.3020 3.1009 32 1 11.1848 4.0708 5.5791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603195812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:03 Heat of formation + Delta-G solvation = 76.648130 kcal Electronic energy + Delta-G solvation = -13994.998489 eV Core-core repulsion = 11570.980181 eV Total energy + Delta-G solvation = -2424.018308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.01646 -37.60533 -35.79700 -34.96622 -32.89026 -32.02458 -29.38549 -27.47146 -25.46567 -23.66430 -22.56423 -21.36844 -20.65253 -18.52907 -17.96952 -17.23600 -16.59210 -16.35099 -15.70570 -15.28959 -14.67497 -14.57273 -14.25664 -13.71939 -13.57032 -13.02862 -12.91057 -12.79377 -12.62448 -12.46905 -11.92054 -11.83028 -11.75104 -11.62769 -11.34144 -10.81027 -10.58160 -10.21130 -9.84171 -8.18759 -6.27366 0.78807 1.38171 1.40024 1.41669 1.54771 1.67762 1.78402 2.44896 3.13956 3.55095 3.69999 3.83674 4.08649 4.25569 4.30657 4.37899 4.41201 4.50135 4.54258 4.79294 4.87113 5.01474 5.14037 5.25934 5.32621 5.46513 5.55397 5.77151 5.77334 5.88117 5.90492 6.23209 6.81216 7.39381 7.73830 8.92417 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.083321 B = 0.004402 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.968421 B = 6358.784154 C = 6474.977629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C -0.082 4.082 4 C -0.121 4.121 5 C 0.107 3.893 6 N -0.285 5.285 7 C -0.052 4.052 8 C -0.011 4.011 9 C 0.102 3.898 10 C -0.524 4.524 11 H 0.043 0.957 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.963 3.037 15 H -0.274 1.274 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.313 5.313 19 N -0.121 5.121 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.226 0.774 30 H 0.007 0.993 31 H 0.035 0.965 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 -3.649 -15.259 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.186 4.186 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.011 4.011 6 N -0.080 5.080 7 C -0.203 4.203 8 C -0.150 4.150 9 C 0.063 3.937 10 C -0.562 4.562 11 H 0.062 0.938 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.788 3.212 15 H -0.199 1.199 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.179 5.179 19 N -0.100 5.100 20 H 0.120 0.880 21 H 0.122 0.878 22 H 0.125 0.875 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.159 0.841 29 H 0.242 0.758 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.476 -3.940 -14.258 22.142 hybrid contribution 1.105 0.587 0.179 1.264 sum -15.371 -3.354 -14.079 21.112 Atomic orbital electron populations 1.24039 0.96002 1.02594 1.00649 1.23039 0.96392 0.98798 1.00332 1.20648 0.97680 0.95982 0.97675 1.21739 0.98437 0.95521 1.00229 1.22597 0.92058 1.01054 0.85441 1.47667 1.07741 1.44752 1.07878 1.23801 0.84919 1.10249 1.01283 1.22701 0.97838 1.03525 0.90914 1.17387 0.84327 0.95801 0.96144 1.21319 0.93181 1.19333 1.22377 0.93823 1.25801 0.95163 0.99072 0.99009 1.70045 0.98977 1.43196 1.44516 0.85432 0.78011 0.78965 0.78818 1.19905 1.20229 1.19496 1.74981 0.96719 1.18450 1.27778 1.78030 1.21873 1.21416 0.88688 0.88007 0.87827 0.87476 0.90004 0.88614 0.91764 0.92261 0.87110 0.84077 0.75751 0.97524 0.94676 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.17 -2.28 9.52 25.65 0.24 -2.03 16 3 C -0.08 -0.93 5.66 29.85 0.17 -0.77 16 4 C -0.12 -2.06 5.32 30.59 0.16 -1.90 16 5 C 0.11 1.88 6.46 86.38 0.56 2.44 16 6 N -0.28 -8.97 3.44 -347.73 -1.20 -10.16 16 7 C -0.05 -1.82 11.49 83.49 0.96 -0.86 16 8 C -0.01 -0.54 6.44 41.60 0.27 -0.27 16 9 C 0.10 5.60 5.55 29.10 0.16 5.76 16 10 C -0.52 -31.43 9.09 25.60 0.23 -31.19 16 11 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 12 C 0.01 0.45 5.46 84.66 0.46 0.91 16 13 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 14 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 15 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 N -0.31 -15.62 12.40 -48.59 -0.60 -16.22 16 19 N -0.12 -5.01 12.92 37.02 0.48 -4.53 16 20 H 0.10 1.15 8.06 -2.91 -0.02 1.13 16 21 H 0.10 1.15 7.84 -2.91 -0.02 1.13 16 22 H 0.11 1.45 8.06 -2.91 -0.02 1.43 16 23 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.30 8.12 -2.38 -0.02 1.29 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.14 1.40 8.07 -2.38 -0.02 1.38 16 29 H 0.23 5.58 8.06 -2.91 -0.02 5.56 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -74.96 284.93 6.26 -68.70 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.08 Total: -0.67 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 4.19 Total: -29.44 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.04 Total: -86.65 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.96 6.26 -68.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603195812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.349 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds