Wall clock time and date at job start Sun Mar 29 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.52998 * 109.46658 * 125.29510 * 13 12 11 15 15 C 1.53778 * 113.61845 * 272.49907 * 14 13 12 16 16 C 1.53786 * 87.08182 * 220.02064 * 15 14 13 17 17 C 1.53782 * 87.08037 * 25.43356 * 16 15 14 18 18 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 19 19 N 1.28632 * 110.17939 * 359.72812 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 24 24 H 1.09001 * 109.47211 * 245.29764 * 13 12 11 25 25 H 1.08999 * 109.47008 * 5.29843 * 13 12 11 26 26 H 1.09003 * 112.85198 * 43.80765 * 14 13 12 27 27 H 1.09000 * 113.61204 * 334.56590 * 15 14 13 28 28 H 1.09000 * 113.61639 * 105.47367 * 15 14 13 29 29 H 1.08993 * 113.61273 * 270.88024 * 16 15 14 30 30 H 1.09002 * 113.61167 * 139.97755 * 16 15 14 31 31 H 1.09003 * 113.60885 * 220.02166 * 17 16 15 32 32 H 1.08991 * 113.69273 * 89.12519 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7535 -6.6858 1.1375 14 6 3.7689 -7.8283 0.1200 15 6 2.4198 -8.5544 -0.0115 16 6 3.2223 -9.8630 -0.1032 17 6 4.3335 -9.1445 0.6803 18 7 3.8413 -4.9286 -0.5706 19 7 3.2179 -3.8494 -0.8890 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.6411 -4.8218 1.7279 24 1 4.7562 -6.5449 1.5410 25 1 3.0668 -6.9302 1.9479 26 1 4.2050 -7.5380 -0.8359 27 1 1.7979 -8.4852 0.8810 28 1 1.8790 -8.3089 -0.9255 29 1 3.5078 -10.1297 -1.1207 30 1 2.7698 -10.6917 0.4416 31 1 5.3376 -9.3753 0.3246 32 1 4.2360 -9.2359 1.7620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603204902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:53 Heat of formation + Delta-G solvation = 83.087446 kcal Electronic energy + Delta-G solvation = -14405.962944 eV Core-core repulsion = 11982.223866 eV Total energy + Delta-G solvation = -2423.739078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.01698 -39.83561 -35.92476 -34.88335 -32.84991 -30.10201 -29.04695 -26.52548 -25.48883 -24.78456 -22.59760 -21.64303 -20.21836 -18.54271 -18.06523 -17.31193 -16.57140 -16.29704 -15.62104 -15.44086 -14.72648 -14.48109 -14.12931 -13.73742 -13.34282 -13.14589 -12.88919 -12.65975 -12.58617 -12.37378 -11.95404 -11.77161 -11.65188 -11.37013 -11.32336 -11.22246 -10.65437 -10.57468 -9.83376 -8.18885 -6.27544 0.80286 1.39812 1.41393 1.54514 1.64239 1.78844 2.44793 3.13819 3.45554 3.60280 3.66997 3.77846 3.93699 4.08298 4.19670 4.36315 4.44874 4.49829 4.76327 4.82986 4.83841 4.95910 5.06523 5.11058 5.25591 5.31988 5.46235 5.55110 5.55886 5.77091 5.89923 6.23056 6.80937 7.39228 7.74791 8.92321 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075045 B = 0.005160 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.018198 B = 5424.714427 C = 5584.998963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.043 0.957 9 C 0.102 3.898 10 C -0.011 4.011 11 C -0.054 4.054 12 N -0.280 5.280 13 C 0.116 3.884 14 C -0.132 4.132 15 C -0.143 4.143 16 C -0.136 4.136 17 C -0.115 4.115 18 N -0.121 5.121 19 N -0.314 5.314 20 H 0.266 0.734 21 H 0.034 0.966 22 H 0.006 0.994 23 H 0.224 0.776 24 H 0.110 0.890 25 H 0.138 0.862 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -19.783 6.427 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.562 4.562 8 H 0.061 0.939 9 C 0.064 3.936 10 C -0.149 4.149 11 C -0.204 4.204 12 N -0.075 5.075 13 C -0.003 4.003 14 C -0.151 4.151 15 C -0.181 4.181 16 C -0.174 4.174 17 C -0.152 4.152 18 N -0.100 5.100 19 N -0.180 5.180 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.024 0.976 23 H 0.240 0.760 24 H 0.128 0.872 25 H 0.156 0.844 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.721 -19.848 5.364 21.631 hybrid contribution -0.598 1.211 0.393 1.407 sum 6.123 -18.637 5.757 20.444 Atomic orbital electron populations 1.70049 1.07262 1.27857 1.51572 1.25797 0.95798 1.02684 0.94688 0.85433 0.78556 0.79088 0.78152 1.19934 1.20193 1.19477 1.21316 0.92744 0.91604 1.50546 0.93854 1.17381 0.91120 0.88414 0.96724 1.22680 0.98691 0.99150 0.94421 1.23758 0.97397 0.94137 1.05108 1.47620 1.21021 1.19806 1.19074 1.22653 1.03976 0.77894 0.95729 1.22922 0.99579 0.93705 0.98900 1.23095 0.95732 0.97001 1.02254 1.22765 0.97046 0.96576 1.00969 1.22889 0.98960 0.91891 1.01506 1.78007 1.21945 1.06403 1.03652 1.74973 1.08184 1.09249 1.25571 0.92477 0.94739 0.97564 0.75989 0.87179 0.84398 0.90366 0.88289 0.93755 0.90636 0.89586 0.90518 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 46.18 29.54 68.60 2.03 48.20 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -31.57 9.09 25.60 0.23 -31.34 16 8 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.10 5.65 5.55 29.10 0.16 5.81 16 10 C -0.01 -0.52 6.44 41.60 0.27 -0.26 16 11 C -0.05 -1.90 11.49 83.49 0.96 -0.94 16 12 N -0.28 -8.99 3.44 -347.73 -1.20 -10.19 16 13 C 0.12 2.18 6.29 86.38 0.54 2.72 16 14 C -0.13 -2.38 3.84 -10.27 -0.04 -2.42 16 15 C -0.14 -2.41 7.63 31.12 0.24 -2.17 16 16 C -0.14 -1.72 8.08 31.12 0.25 -1.47 16 17 C -0.11 -1.29 7.64 31.12 0.24 -1.05 16 18 N -0.12 -5.07 12.76 37.02 0.47 -4.60 16 19 N -0.31 -15.79 12.40 -48.60 -0.60 -16.39 16 20 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 21 H 0.03 1.86 8.12 -2.38 -0.02 1.84 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.22 5.72 8.06 -2.91 -0.02 5.70 16 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.14 1.58 7.77 -2.39 -0.02 1.56 16 26 H 0.08 1.89 7.91 -2.39 -0.02 1.87 16 27 H 0.10 1.34 7.90 -2.39 -0.02 1.33 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -74.92 277.01 5.39 -69.52 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: 1.09 Total: -0.49 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.31 Total: -30.16 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -1.04 Total: -87.09 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -74.92 5.39 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603204902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.611 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds