Wall clock time and date at job start Sun Mar 29 2020 22:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00198 * 2 1 4 4 H 1.48493 * 109.47087 * 240.00233 * 3 2 1 5 5 H 1.48507 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47301 * 119.99782 * 3 2 1 7 7 C 1.37878 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.35349 * 126.75664 * 124.99351 * 10 9 7 12 12 N 1.35312 * 106.17607 * 179.97438 * 11 10 9 13 13 C 1.46506 * 125.86860 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47289 * 124.99932 * 13 12 11 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49882 * 243.74594 * 15 14 13 17 17 C 1.53007 * 117.50142 * 175.08635 * 15 14 13 18 18 N 1.28713 * 108.26773 * 0.26055 * 12 11 10 19 19 N 1.28639 * 110.17297 * 359.56699 * 18 12 11 20 20 H 0.97007 * 120.00370 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47545 * 59.99504 * 9 7 2 22 22 H 1.09012 * 109.47090 * 299.99450 * 9 7 2 23 23 H 1.07999 * 126.91284 * 359.96389 * 11 10 9 24 24 H 1.09001 * 109.47060 * 245.00201 * 13 12 11 25 25 H 1.09004 * 109.47073 * 4.99690 * 13 12 11 26 26 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 27 27 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 28 28 H 1.09000 * 115.55150 * 29.41064 * 15 14 13 29 29 H 1.08998 * 117.49686 * 359.97438 * 16 15 14 30 30 H 1.09007 * 117.50132 * 145.01651 * 16 15 14 31 31 H 1.08995 * 117.49883 * 214.97401 * 17 15 14 32 32 H 1.08998 * 117.49345 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6446 0.0018 11 6 2.2830 -4.6640 0.8907 12 7 3.3134 -5.4501 0.5018 13 6 3.7528 -6.6800 1.1656 14 6 3.7682 -7.8279 0.1542 15 6 4.2265 -9.1124 0.8476 16 6 5.5364 -9.7436 0.3714 17 6 4.1990 -10.4053 0.0297 18 7 3.8444 -4.9291 -0.5486 19 7 3.2178 -3.8543 -0.8757 20 1 -0.4851 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8904 23 1 1.6336 -4.8187 1.7396 24 1 4.7555 -6.5372 1.5684 25 1 3.0660 -6.9201 1.9773 26 1 2.7655 -7.9707 -0.2486 27 1 4.4550 -7.5878 -0.6574 28 1 3.9904 -9.1835 1.9093 29 1 6.0714 -9.2439 -0.4361 30 1 6.1619 -10.2302 1.1199 31 1 3.9453 -11.3268 0.5534 32 1 3.8549 -10.3405 -1.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:57 Heat of formation + Delta-G solvation = 107.323026 kcal Electronic energy + Delta-G solvation = -14107.890852 eV Core-core repulsion = 11685.202708 eV Total energy + Delta-G solvation = -2422.688144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.46582 -38.03884 -34.78579 -33.18865 -31.02575 -30.31629 -27.36265 -24.80873 -23.35591 -22.66794 -21.11170 -20.85481 -19.89287 -16.79307 -16.44284 -16.05075 -15.23874 -14.71358 -14.41142 -14.34762 -13.84564 -12.82607 -12.62094 -12.18232 -11.88859 -11.73924 -11.65884 -11.56931 -10.98275 -10.69843 -10.63394 -10.60836 -10.24611 -10.03501 -9.66384 -9.40246 -9.24978 -8.40559 -8.09610 -5.96537 -3.97032 2.27057 2.82941 3.40454 3.43024 3.45681 3.47282 3.55140 4.28447 4.53350 4.54823 4.59003 4.69420 4.90775 5.06144 5.20176 5.21919 5.35167 5.40226 5.57207 5.61621 5.70115 5.82789 5.89195 6.03374 6.12182 6.37491 7.16679 7.23590 7.55713 7.65389 8.01231 8.40309 9.06187 9.35048 9.65597 11.14601 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.081719 B = 0.004604 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.555783 B = 6080.676898 C = 6221.131656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.033 3.967 11 C -0.083 4.083 12 N -0.305 5.305 13 C 0.125 3.875 14 C -0.101 4.101 15 C -0.153 4.153 16 C -0.179 4.179 17 C -0.178 4.178 18 N -0.110 5.110 19 N -0.263 5.263 20 H 0.262 0.738 21 H 0.039 0.961 22 H 0.036 0.964 23 H 0.181 0.819 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -18.695 4.585 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.104 4.104 11 C -0.232 4.232 12 N -0.100 5.100 13 C 0.003 3.997 14 C -0.140 4.140 15 C -0.171 4.171 16 C -0.216 4.216 17 C -0.215 4.215 18 N -0.088 5.088 19 N -0.130 5.130 20 H 0.071 0.929 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.198 0.802 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.212 -18.720 3.527 20.369 hybrid contribution -0.363 0.847 1.030 1.382 sum 6.849 -17.873 4.556 19.676 Atomic orbital electron populations 1.69937 1.05970 1.26853 1.51114 1.24971 0.94877 0.99209 0.95350 0.86570 0.79486 0.82740 0.78728 1.20091 1.21322 1.20343 1.21016 0.93228 0.89807 1.50187 0.92348 1.17718 0.90892 0.87557 0.98473 1.23029 0.97885 0.97720 0.91763 1.23380 0.97668 0.96175 1.05967 1.47200 1.22464 1.19484 1.20886 1.21888 1.02178 0.80498 0.95133 1.21442 1.03132 0.91363 0.98016 1.22174 1.02129 0.93306 0.99534 1.23094 0.90689 1.04131 1.03694 1.22981 1.01310 0.96087 1.01154 1.78152 1.21598 1.07212 1.01870 1.75073 1.06910 1.07315 1.23703 0.92877 0.94327 0.94578 0.80193 0.88956 0.88240 0.90728 0.89882 0.87421 0.88482 0.88772 0.88715 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.76 9.09 -34.44 -0.31 -15.07 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.09 2.45 5.55 -29.04 -0.16 2.29 16 10 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 11 C -0.08 -1.55 11.49 -17.05 -0.20 -1.74 16 12 N -0.30 -5.15 3.44 -61.26 -0.21 -5.36 16 13 C 0.12 1.36 6.41 -4.04 -0.03 1.34 16 14 C -0.10 -1.01 5.62 -26.73 -0.15 -1.17 16 15 C -0.15 -1.18 5.73 -90.62 -0.52 -1.70 16 16 C -0.18 -1.33 10.18 -26.69 -0.27 -1.60 16 17 C -0.18 -1.31 10.26 -26.69 -0.27 -1.58 16 18 N -0.11 -2.28 12.92 60.35 0.78 -1.50 16 19 N -0.26 -6.42 12.40 33.29 0.41 -6.01 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.04 0.95 8.12 -51.92 -0.42 0.52 16 23 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 28 H 0.11 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 282.25 15.07 4.25 4.25 Total: -1.00 -33.28 282.25 -6.18 -39.46 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -4.59 Total: -4.53 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.54 Total: -17.43 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.72 Total: -39.05 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.28 -6.18 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.779 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds