Wall clock time and date at job start Sun Mar 29 2020 22:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00198 * 2 1 4 4 H 1.48493 * 109.47087 * 240.00233 * 3 2 1 5 5 H 1.48507 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47301 * 119.99782 * 3 2 1 7 7 C 1.37878 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.35349 * 126.75664 * 124.99351 * 10 9 7 12 12 N 1.35312 * 106.17607 * 179.97438 * 11 10 9 13 13 C 1.46506 * 125.86860 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47289 * 124.99932 * 13 12 11 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49882 * 243.74594 * 15 14 13 17 17 C 1.53007 * 117.50142 * 175.08635 * 15 14 13 18 18 N 1.28713 * 108.26773 * 0.26055 * 12 11 10 19 19 N 1.28639 * 110.17297 * 359.56699 * 18 12 11 20 20 H 0.97007 * 120.00370 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47545 * 59.99504 * 9 7 2 22 22 H 1.09012 * 109.47090 * 299.99450 * 9 7 2 23 23 H 1.07999 * 126.91284 * 359.96389 * 11 10 9 24 24 H 1.09001 * 109.47060 * 245.00201 * 13 12 11 25 25 H 1.09004 * 109.47073 * 4.99690 * 13 12 11 26 26 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 27 27 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 28 28 H 1.09000 * 115.55150 * 29.41064 * 15 14 13 29 29 H 1.08998 * 117.49686 * 359.97438 * 16 15 14 30 30 H 1.09007 * 117.50132 * 145.01651 * 16 15 14 31 31 H 1.08995 * 117.49883 * 214.97401 * 17 15 14 32 32 H 1.08998 * 117.49345 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6446 0.0018 11 6 2.2830 -4.6640 0.8907 12 7 3.3134 -5.4501 0.5018 13 6 3.7528 -6.6800 1.1656 14 6 3.7682 -7.8279 0.1542 15 6 4.2265 -9.1124 0.8476 16 6 5.5364 -9.7436 0.3714 17 6 4.1990 -10.4053 0.0297 18 7 3.8444 -4.9291 -0.5486 19 7 3.2178 -3.8543 -0.8757 20 1 -0.4851 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8904 23 1 1.6336 -4.8187 1.7396 24 1 4.7555 -6.5372 1.5684 25 1 3.0660 -6.9201 1.9773 26 1 2.7655 -7.9707 -0.2486 27 1 4.4550 -7.5878 -0.6574 28 1 3.9904 -9.1835 1.9093 29 1 6.0714 -9.2439 -0.4361 30 1 6.1619 -10.2302 1.1199 31 1 3.9453 -11.3268 0.5534 32 1 3.8549 -10.3405 -1.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603224604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:57 Heat of formation + Delta-G solvation = 86.215504 kcal Electronic energy + Delta-G solvation = -14108.806143 eV Core-core repulsion = 11685.202708 eV Total energy + Delta-G solvation = -2423.603435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.02456 -38.71117 -36.17457 -35.14261 -32.88399 -31.47123 -29.29142 -25.90570 -25.40397 -23.23073 -22.60770 -21.77563 -21.21069 -18.52375 -17.95584 -17.39692 -16.54553 -16.24329 -15.65419 -15.48656 -14.83427 -14.48100 -14.25485 -13.87376 -13.41990 -12.92407 -12.70687 -12.65769 -12.42404 -12.34741 -12.30178 -11.84506 -11.66956 -11.39595 -11.24159 -10.93607 -10.70359 -10.57507 -9.84892 -8.18284 -6.27140 0.78184 1.40598 1.44417 1.51964 1.61600 1.77804 2.45101 2.87572 3.14381 3.49086 3.66423 3.89296 3.93371 4.05441 4.23553 4.27224 4.33616 4.48731 4.49751 4.69809 4.81713 4.92725 4.97171 5.06332 5.27851 5.30395 5.36279 5.46296 5.55225 5.77111 5.87604 6.23273 6.80908 7.39445 7.73046 8.92512 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.081719 B = 0.004604 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.555783 B = 6080.676898 C = 6221.131656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.044 0.956 9 C 0.102 3.898 10 C -0.011 4.011 11 C -0.052 4.052 12 N -0.285 5.285 13 C 0.113 3.887 14 C -0.095 4.095 15 C -0.150 4.150 16 C -0.182 4.182 17 C -0.180 4.180 18 N -0.121 5.121 19 N -0.312 5.312 20 H 0.267 0.733 21 H 0.007 0.993 22 H 0.035 0.965 23 H 0.226 0.774 24 H 0.110 0.890 25 H 0.141 0.859 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 -19.892 6.513 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.149 4.149 11 C -0.202 4.202 12 N -0.081 5.081 13 C -0.006 4.006 14 C -0.134 4.134 15 C -0.168 4.168 16 C -0.219 4.219 17 C -0.217 4.217 18 N -0.100 5.100 19 N -0.179 5.179 20 H 0.075 0.925 21 H 0.025 0.975 22 H 0.053 0.947 23 H 0.242 0.758 24 H 0.128 0.872 25 H 0.159 0.841 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.872 -19.954 5.452 22.133 hybrid contribution -0.543 1.071 0.454 1.284 sum 7.329 -18.884 5.906 21.099 Atomic orbital electron populations 1.70032 1.07268 1.28007 1.51412 1.25798 0.95807 1.02689 0.94678 0.85549 0.78386 0.78534 0.78849 1.20164 1.20002 1.19282 1.21262 0.92776 0.91615 1.50777 0.93787 1.17382 0.91119 0.88351 0.96793 1.22698 0.98726 0.99136 0.94369 1.23801 0.97223 0.94025 1.05178 1.47658 1.20937 1.20110 1.19365 1.22523 1.04236 0.78017 0.95850 1.21345 1.02183 0.92346 0.97487 1.22156 1.02232 0.92006 1.00426 1.23153 0.90833 1.04123 1.03808 1.23057 1.01174 0.96573 1.00925 1.78029 1.21810 1.06685 1.03472 1.74980 1.08140 1.09264 1.25474 0.92458 0.97499 0.94688 0.75768 0.87225 0.84125 0.91599 0.92051 0.85152 0.89532 0.87318 0.87216 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.53 -31.57 9.09 25.60 0.23 -31.34 16 8 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.10 5.61 5.55 29.10 0.16 5.78 16 10 C -0.01 -0.52 6.44 41.59 0.27 -0.25 16 11 C -0.05 -1.82 11.49 83.49 0.96 -0.86 16 12 N -0.29 -9.05 3.44 -347.72 -1.20 -10.25 16 13 C 0.11 2.06 6.41 86.38 0.55 2.62 16 14 C -0.10 -1.71 5.62 30.59 0.17 -1.54 16 15 C -0.15 -1.87 5.73 -10.79 -0.06 -1.93 16 16 C -0.18 -2.31 10.18 30.62 0.31 -2.00 16 17 C -0.18 -2.25 10.26 30.62 0.31 -1.94 16 18 N -0.12 -5.01 12.92 37.02 0.48 -4.54 16 19 N -0.31 -15.59 12.40 -48.60 -0.60 -16.19 16 20 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 21 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 22 H 0.03 1.87 8.12 -2.38 -0.02 1.85 16 23 H 0.23 5.64 8.06 -2.91 -0.02 5.62 16 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.14 1.51 8.07 -2.38 -0.02 1.49 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.37 7.86 -2.39 -0.02 1.35 16 28 H 0.13 1.08 8.08 -2.39 -0.02 1.06 16 29 H 0.09 1.27 8.03 -2.39 -0.02 1.26 16 30 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -74.23 282.25 5.46 -68.77 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.09 Total: 0.51 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.37 Total: -30.50 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.03 Total: -86.79 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.23 5.46 -68.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.986 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds