Wall clock time and date at job start Sun Mar 29 2020 22:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00246 * 2 1 4 4 C 1.50700 * 120.00003 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46805 * 95.00223 * 4 2 1 6 6 N 1.46503 * 109.46672 * 180.02562 * 5 4 2 7 7 C 1.35310 * 125.86801 * 125.32835 * 6 5 4 8 8 C 1.35348 * 106.17503 * 180.10838 * 7 6 5 9 9 C 1.50700 * 126.75241 * 179.84708 * 8 7 6 10 10 C 1.50702 * 109.46869 * 124.71667 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.33770 * 106.49624 * 359.59617 * 8 7 6 19 19 N 1.28632 * 108.88455 * 0.25241 * 18 8 7 20 20 H 1.08006 * 120.00398 * 179.97438 * 1 2 3 21 21 H 1.08006 * 120.00073 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47426 * 270.00118 * 3 2 1 23 23 H 1.09003 * 109.46997 * 30.00077 * 3 2 1 24 24 H 1.09003 * 109.47340 * 149.99876 * 3 2 1 25 25 H 1.08998 * 109.47270 * 335.00685 * 4 2 1 26 26 H 1.08992 * 109.47392 * 215.00287 * 4 2 1 27 27 H 1.08989 * 109.47010 * 60.00087 * 5 4 2 28 28 H 1.08998 * 109.47091 * 299.99762 * 5 4 2 29 29 H 1.08000 * 126.91429 * 359.96633 * 7 6 5 30 30 H 1.09004 * 109.47210 * 4.71960 * 9 8 7 31 31 H 1.08994 * 109.47551 * 244.71612 * 9 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.1593 -2.9535 -1.4358 7 6 2.8315 -4.0582 -2.1451 8 6 3.7679 -4.9890 -1.8476 9 6 3.8430 -6.3957 -2.3829 10 6 5.1919 -6.6208 -3.0161 11 1 5.9220 -5.8250 -3.0292 12 6 5.4964 -7.8448 -3.5733 13 7 4.6076 -8.8140 -3.5570 14 14 7.1711 -8.1261 -4.3513 15 1 8.2312 -7.9226 -3.3314 16 1 7.2469 -9.5138 -4.8746 17 1 7.3665 -7.1656 -5.4668 18 7 4.6168 -4.4129 -0.9891 19 7 4.2285 -3.2072 -0.7656 20 1 -0.5401 -0.9353 -0.0004 21 1 -0.5400 0.9354 0.0004 22 1 2.2452 1.6198 -1.0276 23 1 1.4744 2.0647 0.5139 24 1 3.0159 1.1747 0.5139 25 1 1.4385 -2.0853 0.4351 26 1 2.9741 -1.1987 0.5900 27 1 3.0522 -0.9044 -1.8709 28 1 1.5167 -1.7910 -2.0257 29 1 1.9903 -4.1746 -2.8124 30 1 3.0623 -6.5426 -3.1293 31 1 3.7026 -7.1034 -1.5660 32 1 4.8216 -9.6749 -3.9493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603227556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:08 Heat of formation + Delta-G solvation = 77.788076 kcal Electronic energy + Delta-G solvation = -14142.252612 eV Core-core repulsion = 11718.283736 eV Total energy + Delta-G solvation = -2423.968876 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.04371 -37.99846 -35.81841 -34.86763 -32.87054 -30.81250 -29.24081 -28.09969 -25.70938 -25.32624 -22.63629 -21.57335 -19.41466 -18.51108 -17.98277 -17.19105 -16.55869 -15.97652 -15.70255 -15.27048 -14.60102 -14.43970 -14.30797 -13.89152 -13.69071 -13.32423 -12.83606 -12.67793 -12.56554 -12.55079 -12.27187 -11.93937 -11.81973 -11.66789 -11.38456 -10.89546 -10.57895 -9.98236 -9.84865 -8.18343 -6.27180 0.74836 1.22182 1.40741 1.44424 1.52133 1.65942 1.76763 2.45100 3.14384 3.53622 3.73143 3.83380 3.95150 4.10133 4.28894 4.29844 4.47709 4.55856 4.73657 4.84661 4.89243 4.98838 5.05709 5.17349 5.30358 5.44843 5.54648 5.69022 5.77002 5.85773 5.92303 6.22932 6.80816 7.39413 7.71706 8.92466 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072392 B = 0.004791 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.691413 B = 5842.924688 C = 6032.955322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.133 4.133 3 C -0.122 4.122 4 C -0.092 4.092 5 C 0.117 3.883 6 N -0.286 5.286 7 C -0.053 4.053 8 C -0.010 4.010 9 C 0.102 3.898 10 C -0.526 4.526 11 H 0.044 0.956 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.268 1.268 18 N -0.311 5.311 19 N -0.119 5.119 20 H 0.100 0.900 21 H 0.115 0.885 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.225 0.775 30 H 0.035 0.965 31 H 0.007 0.993 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 19.013 3.193 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.130 4.130 5 C -0.002 4.002 6 N -0.081 5.081 7 C -0.203 4.203 8 C -0.148 4.148 9 C 0.063 3.937 10 C -0.564 4.564 11 H 0.062 0.938 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.193 1.193 18 N -0.177 5.177 19 N -0.098 5.098 20 H 0.119 0.881 21 H 0.133 0.867 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.241 0.759 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.303 19.438 4.144 21.945 hybrid contribution 0.087 -0.929 -0.962 1.340 sum -9.216 18.509 3.182 20.920 Atomic orbital electron populations 1.23957 0.94874 1.03019 0.99898 1.21519 0.95499 0.94541 1.01823 1.20923 1.00112 0.93888 1.02961 1.20860 1.01091 0.96208 0.94834 1.22458 0.97507 0.80143 1.00089 1.47640 1.18466 1.13109 1.28902 1.23787 1.05276 0.86718 1.04499 1.22692 0.93567 1.00051 0.98478 1.17386 0.97201 0.84628 0.94445 1.21264 1.00067 0.98010 1.37089 0.93762 1.25797 1.01038 0.95508 0.96605 1.70035 1.36284 1.04072 1.46321 0.85550 0.79557 0.77481 0.78735 1.20135 1.20009 1.19303 1.74980 1.25031 1.00481 1.17203 1.78027 1.01392 1.11940 1.18432 0.88128 0.86656 0.90436 0.90682 0.92193 0.91236 0.91023 0.87238 0.84736 0.75897 0.94707 0.97450 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 13.89 67.79 0.94 -1.22 16 2 C -0.13 -1.86 5.31 -16.48 -0.09 -1.95 16 3 C -0.12 -1.42 10.03 71.24 0.71 -0.71 16 4 C -0.09 -1.71 5.50 29.85 0.16 -1.54 16 5 C 0.12 2.26 6.44 86.38 0.56 2.81 16 6 N -0.29 -9.13 3.44 -347.73 -1.20 -10.33 16 7 C -0.05 -1.86 11.49 83.49 0.96 -0.90 16 8 C -0.01 -0.46 6.44 41.60 0.27 -0.19 16 9 C 0.10 5.60 5.55 29.10 0.16 5.76 16 10 C -0.53 -31.52 9.09 25.60 0.23 -31.28 16 11 H 0.04 2.71 7.74 -2.91 -0.02 2.69 16 12 C 0.01 0.51 5.46 84.66 0.46 0.98 16 13 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 14 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 N -0.31 -15.45 12.40 -48.60 -0.60 -16.05 16 19 N -0.12 -4.91 12.91 37.02 0.48 -4.43 16 20 H 0.10 1.18 7.99 -2.91 -0.02 1.15 16 21 H 0.12 1.04 8.04 -2.91 -0.02 1.02 16 22 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 24 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 25 H 0.07 1.40 7.99 -2.39 -0.02 1.38 16 26 H 0.07 1.59 8.07 -2.39 -0.02 1.57 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.13 1.73 8.07 -2.39 -0.02 1.71 16 29 H 0.22 5.71 8.06 -2.91 -0.02 5.69 16 30 H 0.03 1.86 8.12 -2.38 -0.02 1.84 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -73.29 285.05 6.45 -66.84 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.08 Total: 0.01 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.37 Total: -28.23 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.04 Total: -86.58 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.29 6.45 -66.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603227556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.630 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds