Wall clock time and date at job start Sun Mar 29 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.83213 * 2 1 4 4 N 1.32549 * 119.19546 * 179.97438 * 3 2 1 5 5 C 1.31785 * 121.01167 * 359.97438 * 4 3 2 6 6 N 1.31753 * 121.83218 * 359.74583 * 5 4 3 7 7 C 1.32987 * 120.68858 * 0.52029 * 6 5 4 8 8 N 1.38542 * 120.53335 * 179.76454 * 7 6 5 9 9 C 1.46499 * 119.99875 * 359.72433 * 8 7 6 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47282 * 89.99593 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 H 1.09002 * 109.46920 * 270.02441 * 1 2 3 21 21 H 1.09002 * 109.47226 * 30.01919 * 1 2 3 22 22 H 1.09001 * 109.47460 * 150.02359 * 1 2 3 23 23 H 1.07996 * 120.39725 * 359.95626 * 3 2 1 24 24 H 1.07995 * 119.08263 * 179.97438 * 5 4 3 25 25 H 0.97000 * 119.99704 * 179.71663 * 8 7 6 26 26 H 1.09002 * 109.47391 * 59.99672 * 9 8 7 27 27 H 1.09001 * 109.46813 * 299.99728 * 9 8 7 28 28 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 30 30 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 31 31 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 32 32 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2150 1.1860 0.0000 4 7 3.5399 1.1481 0.0005 5 6 4.1863 -0.0003 0.0015 6 7 3.5518 -1.1549 0.0070 7 6 2.2226 -1.1989 0.0014 8 7 1.5587 -2.4149 0.0023 9 6 2.3212 -3.6658 0.0034 10 6 1.3549 -4.8520 0.0037 11 6 2.1512 -6.1585 0.0055 12 6 1.1995 -7.3269 0.0063 13 1 0.1333 -7.1549 0.0061 14 6 1.6899 -8.6155 0.0074 15 7 2.9883 -8.8249 0.0072 16 14 0.5102 -10.0639 0.0077 17 1 0.1982 -10.4486 -1.3923 18 1 1.1373 -11.2129 0.7088 19 1 -0.7429 -9.6814 0.7069 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6952 2.1326 -0.0007 24 1 5.2663 0.0052 0.0015 25 1 0.5890 -2.4379 0.0024 26 1 2.9490 -3.7079 0.8935 27 1 2.9491 -3.7093 -0.8865 28 1 0.7266 -4.8088 0.8934 29 1 0.7274 -4.8097 -0.8865 30 1 2.7797 -6.2021 -0.8840 31 1 2.7784 -6.2005 0.8959 32 1 3.3333 -9.7315 0.0076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603287062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:25 Heat of formation + Delta-G solvation = 8.698549 kcal Electronic energy + Delta-G solvation = -14096.500108 eV Core-core repulsion = 11669.535285 eV Total energy + Delta-G solvation = -2426.964823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86550 -38.03649 -35.79787 -34.63618 -34.02213 -32.04405 -28.65617 -28.14923 -25.44682 -23.63911 -23.60329 -22.15529 -19.10541 -18.70023 -18.19104 -16.59616 -16.52024 -16.13985 -15.70801 -15.37920 -15.23537 -14.35041 -14.22415 -13.91608 -13.77999 -13.72597 -13.15810 -12.84014 -12.55189 -12.36123 -12.21827 -11.61673 -11.56242 -11.50123 -11.21105 -10.68837 -10.56336 -10.06729 -8.98875 -8.20599 -6.32187 0.13712 0.44788 1.41125 1.42346 1.53346 2.11797 2.41682 2.97815 3.13228 3.39646 3.49830 3.80750 4.11273 4.16625 4.21166 4.29803 4.54466 4.69018 4.81898 4.94155 4.98141 5.05657 5.13924 5.17341 5.47313 5.53543 5.68935 5.81802 5.83666 6.09715 6.22649 6.67522 6.84919 7.37387 7.39331 8.91490 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060489 B = 0.004592 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.784558 B = 6096.708807 C = 6528.441821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.259 4.259 3 C 0.165 3.835 4 N -0.580 5.580 5 C 0.318 3.682 6 N -0.605 5.605 7 C 0.415 3.585 8 N -0.701 5.701 9 C 0.145 3.855 10 C -0.104 4.104 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.261 1.261 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.064 0.936 23 H 0.196 0.804 24 H 0.212 0.788 25 H 0.419 0.581 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.064 0.936 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 18.285 -0.022 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.269 4.269 3 C 0.004 3.996 4 N -0.298 5.298 5 C 0.029 3.971 6 N -0.330 5.330 7 C 0.170 3.830 8 N -0.335 5.335 9 C 0.021 3.979 10 C -0.142 4.142 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.083 0.917 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.083 0.917 23 H 0.213 0.787 24 H 0.228 0.772 25 H 0.259 0.741 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.478 17.973 -0.012 18.523 hybrid contribution -1.072 -1.208 -0.011 1.615 sum -5.550 16.765 -0.023 17.660 Atomic orbital electron populations 1.20566 0.87307 1.04053 1.03302 1.21283 1.00096 0.92646 1.12873 1.23355 0.89270 0.98443 0.88555 1.68447 1.10714 1.30433 1.20238 1.25072 1.01721 0.81606 0.88679 1.68024 1.08783 1.32744 1.23482 1.18840 0.88894 0.87099 0.88137 1.44691 1.09132 1.01973 1.77695 1.21152 0.94132 0.82044 1.00589 1.21608 0.97798 0.93039 1.01750 1.18914 0.95015 0.92130 0.95116 1.21675 0.93807 0.91973 1.50633 0.91723 1.26006 0.96832 1.02401 0.94703 1.70110 1.13803 1.21923 1.51591 0.85423 0.78918 0.78079 0.78471 1.19804 1.20941 1.18505 0.90204 0.88756 0.91737 0.78702 0.77173 0.74080 0.93280 0.93310 0.91745 0.91728 0.98881 0.98870 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.64 71.24 0.69 -0.64 16 2 C -0.26 -5.63 5.93 -19.56 -0.12 -5.75 16 3 C 0.16 3.38 10.99 84.56 0.93 4.30 16 4 N -0.58 -14.46 10.43 -200.32 -2.09 -16.55 16 5 C 0.32 8.42 12.28 180.90 2.22 10.64 16 6 N -0.61 -19.01 9.70 -197.62 -1.92 -20.93 16 7 C 0.41 11.87 7.50 133.16 1.00 12.87 16 8 N -0.70 -19.86 5.62 -344.59 -1.94 -21.80 16 9 C 0.15 5.10 5.73 86.38 0.49 5.59 16 10 C -0.10 -4.04 5.27 30.59 0.16 -3.88 16 11 C 0.03 1.35 4.97 29.85 0.15 1.50 16 12 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 15 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 16 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 20 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 22 H 0.06 0.90 6.68 -2.39 -0.02 0.89 16 23 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 24 H 0.21 4.26 8.06 -2.91 -0.02 4.24 16 25 H 0.42 9.67 6.60 -92.71 -0.61 9.06 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.35 277.32 3.09 -65.26 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.50 Total: 10.04 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.22 Total: -5.12 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.66 Total: -115.91 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.35 3.09 -65.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603287062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.961 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds