Wall clock time and date at job start Sun Mar 29 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46581 * 2 1 4 4 H 1.09001 * 109.46824 * 305.73729 * 3 2 1 5 5 C 1.50704 * 109.46658 * 185.74090 * 3 2 1 6 6 H 1.08000 * 119.99903 * 335.21410 * 5 3 2 7 7 C 1.37878 * 119.99837 * 155.21967 * 5 3 2 8 8 N 1.31513 * 120.00005 * 355.33438 * 7 5 3 9 9 Si 1.86793 * 120.00120 * 175.34245 * 7 5 3 10 10 H 1.48498 * 109.47488 * 89.99497 * 9 7 5 11 11 H 1.48500 * 109.47039 * 209.99794 * 9 7 5 12 12 H 1.48510 * 109.47004 * 329.99412 * 9 7 5 13 13 N 1.46497 * 109.47146 * 65.74062 * 3 2 1 14 14 C 1.38545 * 120.00001 * 274.99637 * 13 3 2 15 15 N 1.32988 * 120.52894 * 0.02562 * 14 13 3 16 16 C 1.31756 * 120.68415 * 179.97438 * 15 14 13 17 17 N 1.31788 * 121.83303 * 0.02636 * 16 15 14 18 18 C 1.32557 * 121.01002 * 359.97151 * 17 16 15 19 19 C 1.38118 * 119.19907 * 359.74866 * 18 17 16 20 20 C 1.50698 * 120.83443 * 180.25212 * 19 18 17 21 21 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47698 * 299.99770 * 1 2 3 23 23 H 1.08999 * 109.47229 * 60.00377 * 1 2 3 24 24 H 1.09000 * 109.47049 * 240.00260 * 2 1 3 25 25 H 1.08995 * 109.46742 * 119.99648 * 2 1 3 26 26 H 0.97005 * 120.00232 * 5.28344 * 8 7 5 27 27 H 0.97002 * 120.00197 * 94.99833 * 13 3 2 28 28 H 1.08002 * 119.08282 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.39904 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46809 * 270.27345 * 20 19 18 31 31 H 1.08995 * 109.46799 * 30.27104 * 20 19 18 32 32 H 1.09001 * 109.47241 * 150.27165 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5951 1.9851 -0.8342 5 6 3.5403 1.4450 -0.1421 6 1 4.1135 0.5841 0.1688 7 6 4.1810 2.5463 -0.6690 8 7 3.4783 3.5569 -1.1320 9 14 6.0473 2.6028 -0.7253 10 1 6.5217 2.0232 -2.0075 11 1 6.5031 4.0122 -0.6204 12 1 6.6007 1.8180 0.4076 13 7 1.6676 2.0921 1.2592 14 6 0.4178 2.6743 1.3953 15 7 -0.4522 2.6491 0.3898 16 6 -1.6418 3.2014 0.5161 17 7 -2.0173 3.7962 1.6305 18 6 -1.2057 3.8619 2.6765 19 6 0.0495 3.2916 2.5923 20 6 0.9997 3.3398 3.7609 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5132 3.5621 -1.0337 27 1 2.2961 2.1146 1.9977 28 1 -2.3280 3.1663 -0.3172 29 1 -1.5237 4.3515 3.5852 30 1 1.6064 4.2433 3.6989 31 1 0.4316 3.3467 4.6911 32 1 1.6485 2.4642 3.7380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603341973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:31 Heat of formation + Delta-G solvation = 33.816941 kcal Electronic energy + Delta-G solvation = -15310.277841 eV Core-core repulsion = 12884.402234 eV Total energy + Delta-G solvation = -2425.875607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31933 -36.61888 -33.59462 -33.00742 -31.94995 -30.22563 -27.14392 -26.38354 -23.38757 -22.60078 -22.03559 -20.11957 -17.90613 -17.04696 -16.37507 -14.85253 -14.42688 -14.08094 -13.89312 -13.85528 -13.21864 -13.02859 -12.86625 -12.57384 -12.30366 -12.01631 -11.06401 -11.02307 -10.87118 -10.70159 -10.32449 -10.24796 -10.07957 -9.62017 -9.06976 -8.92038 -8.52892 -8.38685 -7.05404 -6.60143 -4.42172 1.64728 2.11665 3.30815 3.33199 3.49852 4.06342 4.34661 4.55466 4.82387 4.97783 5.22694 5.35751 5.45581 5.70965 5.88933 5.95881 5.99572 6.02356 6.21008 6.28463 6.39484 6.64203 6.80802 6.88116 6.93719 7.09647 7.30735 7.54145 7.79282 8.19519 8.27032 8.52907 8.64795 9.06127 9.38916 10.76681 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.009454 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.499470 B = 2961.122709 C = 3283.101771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.243 3.757 4 H 0.061 0.939 5 C -0.611 4.611 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.887 5.887 9 Si 1.071 2.929 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.440 3.560 15 N -0.566 5.566 16 C 0.321 3.679 17 N -0.587 5.587 18 C 0.163 3.837 19 C -0.282 4.282 20 C -0.089 4.089 21 H 0.026 0.974 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.278 0.722 27 H 0.395 0.605 28 H 0.182 0.818 29 H 0.150 0.850 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 -1.679 6.535 8.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.078 0.922 5 C -0.649 4.649 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.520 5.520 9 Si 0.898 3.102 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.302 5.302 14 C 0.193 3.807 15 N -0.291 5.291 16 C 0.031 3.969 17 N -0.308 5.308 18 C 0.003 3.997 19 C -0.294 4.294 20 C -0.147 4.147 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.198 0.802 29 H 0.167 0.833 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.837 -0.933 5.052 6.412 hybrid contribution -0.511 -0.850 1.521 1.815 sum -4.349 -1.783 6.572 8.080 Atomic orbital electron populations 1.21834 0.97095 0.98365 1.02074 1.21819 0.94258 0.99180 1.00318 1.19007 0.94960 0.88667 0.83013 0.92150 1.22163 0.91188 1.04172 1.47415 0.92581 1.26017 1.07237 0.92473 0.91986 1.70721 1.09816 1.32340 1.39143 0.83526 0.73784 0.76211 0.76662 1.21087 1.20895 1.21209 1.46998 1.09683 1.55054 1.18506 1.18867 0.87598 0.86370 0.87879 1.68223 1.04508 1.25124 1.31266 1.24468 0.90496 0.87789 0.94174 1.68303 1.37157 1.23584 1.01770 1.22500 0.88702 0.92181 0.96359 1.20893 0.99659 1.10853 0.97953 1.20374 0.97636 1.01942 0.94792 0.95508 0.93710 0.92359 0.92311 0.93987 0.91001 0.76728 0.80161 0.83301 0.91803 0.91929 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.46 37.16 0.31 -2.32 16 2 C -0.12 -2.47 5.58 -26.73 -0.15 -2.62 16 3 C 0.24 5.80 1.96 -69.08 -0.14 5.66 16 4 H 0.06 1.63 6.11 -51.93 -0.32 1.31 16 5 C -0.61 -15.85 8.50 -34.44 -0.29 -16.14 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.03 0.86 5.45 -17.82 -0.10 0.77 16 8 N -0.89 -25.63 13.62 55.43 0.76 -24.88 16 9 Si 1.07 23.64 29.91 -169.99 -5.08 18.56 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.67 -14.53 5.07 -54.90 -0.28 -14.81 16 14 C 0.44 9.02 6.07 -154.78 -0.94 8.08 16 15 N -0.57 -11.62 6.61 -13.81 -0.09 -11.71 16 16 C 0.32 5.82 12.28 -92.19 -1.13 4.69 16 17 N -0.59 -10.48 10.43 -14.66 -0.15 -10.63 16 18 C 0.16 2.70 10.99 -17.28 -0.19 2.51 16 19 C -0.28 -4.96 5.93 -104.15 -0.62 -5.58 16 20 C -0.09 -1.27 9.64 36.00 0.35 -0.92 16 21 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.04 0.90 5.57 -51.93 -0.29 0.61 16 23 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.28 8.23 6.66 -40.82 -0.27 7.96 16 27 H 0.40 8.12 6.72 -40.82 -0.27 7.85 16 28 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 29 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 32 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 LS Contribution 265.92 15.07 4.01 4.01 Total: -1.00 -28.88 265.92 -7.80 -36.68 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.06 Total: 8.65 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.89 Total: -5.87 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.23 Total: -62.03 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.08 Total: 18.56 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.88 -7.80 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.495 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds