Wall clock time and date at job start Sun Mar 29 2020 22:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46581 * 2 1 4 4 H 1.09001 * 109.46824 * 305.73729 * 3 2 1 5 5 C 1.50704 * 109.46658 * 185.74090 * 3 2 1 6 6 H 1.08000 * 119.99903 * 335.21410 * 5 3 2 7 7 C 1.37878 * 119.99837 * 155.21967 * 5 3 2 8 8 N 1.31513 * 120.00005 * 355.33438 * 7 5 3 9 9 Si 1.86793 * 120.00120 * 175.34245 * 7 5 3 10 10 H 1.48498 * 109.47488 * 89.99497 * 9 7 5 11 11 H 1.48500 * 109.47039 * 209.99794 * 9 7 5 12 12 H 1.48510 * 109.47004 * 329.99412 * 9 7 5 13 13 N 1.46497 * 109.47146 * 65.74062 * 3 2 1 14 14 C 1.38545 * 120.00001 * 274.99637 * 13 3 2 15 15 N 1.32988 * 120.52894 * 0.02562 * 14 13 3 16 16 C 1.31756 * 120.68415 * 179.97438 * 15 14 13 17 17 N 1.31788 * 121.83303 * 0.02636 * 16 15 14 18 18 C 1.32557 * 121.01002 * 359.97151 * 17 16 15 19 19 C 1.38118 * 119.19907 * 359.74866 * 18 17 16 20 20 C 1.50698 * 120.83443 * 180.25212 * 19 18 17 21 21 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47698 * 299.99770 * 1 2 3 23 23 H 1.08999 * 109.47229 * 60.00377 * 1 2 3 24 24 H 1.09000 * 109.47049 * 240.00260 * 2 1 3 25 25 H 1.08995 * 109.46742 * 119.99648 * 2 1 3 26 26 H 0.97005 * 120.00232 * 5.28344 * 8 7 5 27 27 H 0.97002 * 120.00197 * 94.99833 * 13 3 2 28 28 H 1.08002 * 119.08282 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.39904 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46809 * 270.27345 * 20 19 18 31 31 H 1.08995 * 109.46799 * 30.27104 * 20 19 18 32 32 H 1.09001 * 109.47241 * 150.27165 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5951 1.9851 -0.8342 5 6 3.5403 1.4450 -0.1421 6 1 4.1135 0.5841 0.1688 7 6 4.1810 2.5463 -0.6690 8 7 3.4783 3.5569 -1.1320 9 14 6.0473 2.6028 -0.7253 10 1 6.5217 2.0232 -2.0075 11 1 6.5031 4.0122 -0.6204 12 1 6.6007 1.8180 0.4076 13 7 1.6676 2.0921 1.2592 14 6 0.4178 2.6743 1.3953 15 7 -0.4522 2.6491 0.3898 16 6 -1.6418 3.2014 0.5161 17 7 -2.0173 3.7962 1.6305 18 6 -1.2057 3.8619 2.6765 19 6 0.0495 3.2916 2.5923 20 6 0.9997 3.3398 3.7609 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5132 3.5621 -1.0337 27 1 2.2961 2.1146 1.9977 28 1 -2.3280 3.1663 -0.3172 29 1 -1.5237 4.3515 3.5852 30 1 1.6064 4.2433 3.6989 31 1 0.4316 3.3467 4.6911 32 1 1.6485 2.4642 3.7380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603341973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:30 Heat of formation + Delta-G solvation = 17.526842 kcal Electronic energy + Delta-G solvation = -15310.984233 eV Core-core repulsion = 12884.402234 eV Total energy + Delta-G solvation = -2426.581999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77229 -38.31464 -35.18588 -34.56262 -33.70183 -31.77864 -28.64246 -28.01269 -25.21875 -24.14726 -23.43250 -21.85332 -19.60019 -18.69112 -17.99299 -16.42441 -16.00629 -15.66398 -15.64608 -15.18161 -14.98658 -14.60802 -14.31858 -13.98783 -13.79170 -13.15276 -12.83697 -12.71652 -12.60986 -12.33422 -11.98532 -11.93231 -11.53167 -11.30717 -10.93481 -10.54196 -10.42235 -9.87279 -8.72807 -8.61250 -6.52654 0.26607 0.63960 1.53363 1.59023 1.78029 2.44145 2.54011 3.12084 3.23361 3.53470 3.67572 3.97187 4.19897 4.30327 4.33843 4.38217 4.58038 4.74335 4.78720 4.94324 5.06383 5.10747 5.15802 5.20849 5.28378 5.49757 5.70406 5.79373 6.07706 6.17031 6.45376 6.61533 6.97646 7.36533 7.57478 8.65123 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.009454 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.499470 B = 2961.122709 C = 3283.101771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.618 4.618 6 H 0.056 0.944 7 C -0.014 4.014 8 N -0.920 5.920 9 Si 1.117 2.883 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.683 5.683 14 C 0.417 3.583 15 N -0.591 5.591 16 C 0.310 3.690 17 N -0.588 5.588 18 C 0.164 3.836 19 C -0.283 4.283 20 C -0.086 4.086 21 H 0.050 0.950 22 H 0.036 0.964 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.260 0.740 27 H 0.399 0.601 28 H 0.206 0.794 29 H 0.191 0.809 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 -1.920 8.146 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.150 3.850 4 H 0.041 0.959 5 C -0.656 4.656 6 H 0.074 0.926 7 C -0.216 4.216 8 N -0.555 5.555 9 Si 0.938 3.062 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.313 5.313 14 C 0.171 3.829 15 N -0.317 5.317 16 C 0.021 3.979 17 N -0.309 5.309 18 C 0.003 3.997 19 C -0.294 4.294 20 C -0.144 4.144 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.237 0.763 28 H 0.223 0.777 29 H 0.208 0.792 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.112 -1.184 6.682 7.934 hybrid contribution -0.581 -0.769 1.073 1.442 sum -4.693 -1.954 7.755 9.272 Atomic orbital electron populations 1.21658 0.95531 0.99543 1.01122 1.21742 0.95597 0.97495 1.00293 1.18685 0.93728 0.89664 0.82883 0.95944 1.22451 0.92490 1.03892 1.46761 0.92570 1.27344 1.10914 0.92071 0.91298 1.70858 1.08810 1.33850 1.41973 0.82942 0.69211 0.76220 0.77779 1.20066 1.21376 1.18924 1.46313 1.10716 1.56562 1.17699 1.19108 0.87231 0.87272 0.89282 1.68193 1.05425 1.26007 1.32046 1.24998 0.90192 0.87499 0.95228 1.68390 1.37413 1.23058 1.01991 1.23175 0.87959 0.91332 0.97239 1.21262 1.00712 1.09671 0.97802 1.20433 0.97347 1.01797 0.94855 0.93108 0.94494 0.93430 0.92787 0.93356 0.92896 0.76313 0.77726 0.79233 0.91664 0.88579 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 8.46 71.98 0.61 -4.01 16 2 C -0.11 -4.75 5.58 30.60 0.17 -4.58 16 3 C 0.25 12.26 1.96 44.25 0.09 12.35 16 4 H 0.02 1.27 6.11 -2.39 -0.01 1.26 16 5 C -0.62 -32.39 8.50 25.60 0.22 -32.18 16 6 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 7 C -0.01 -0.76 5.45 84.65 0.46 -0.29 16 8 N -0.92 -54.63 13.62 21.45 0.29 -54.34 16 9 Si 1.12 47.48 29.91 68.60 2.05 49.53 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 13 N -0.68 -29.72 5.07 -327.62 -1.66 -31.38 16 14 C 0.42 17.00 6.07 133.16 0.81 17.81 16 15 N -0.59 -24.36 6.61 -197.61 -1.31 -25.67 16 16 C 0.31 11.00 12.28 180.90 2.22 13.22 16 17 N -0.59 -19.82 10.43 -200.30 -2.09 -21.91 16 18 C 0.16 4.96 10.99 84.55 0.93 5.89 16 19 C -0.28 -9.47 5.93 -19.56 -0.12 -9.59 16 20 C -0.09 -2.25 9.64 71.24 0.69 -1.56 16 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.04 1.45 5.57 -2.39 -0.01 1.44 16 23 H 0.05 1.89 7.73 -2.39 -0.02 1.87 16 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.26 16.09 6.66 -92.70 -0.62 15.47 16 27 H 0.40 16.48 6.72 -92.71 -0.62 15.86 16 28 H 0.21 5.89 8.06 -2.91 -0.02 5.86 16 29 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.06 1.51 6.68 -2.39 -0.02 1.50 16 Total: -1.00 -62.86 265.92 4.01 -58.85 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.65 Total: 27.86 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.08 Total: -2.94 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -4.77 Total: -133.31 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.05 Total: 49.53 kcal Total: -62.86 4.01 -58.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.378 kcal (2) G-P(sol) polarization free energy of solvation -62.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds