Wall clock time and date at job start Sun Mar 29 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.38548 * 119.99997 * 84.99839 * 13 3 2 15 15 N 1.32985 * 120.53133 * 359.71899 * 14 13 3 16 16 C 1.31756 * 120.68748 * 179.76350 * 15 14 13 17 17 N 1.31785 * 121.82968 * 0.53056 * 16 15 14 18 18 C 1.32552 * 121.00989 * 359.73020 * 17 16 15 19 19 C 1.38115 * 119.20215 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.83685 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 27 27 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 28 28 H 1.07997 * 119.08478 * 180.26224 * 16 15 14 29 29 H 1.08003 * 120.39926 * 180.02562 * 18 17 16 30 30 H 1.09005 * 109.46846 * 270.01673 * 20 19 18 31 31 H 1.08999 * 109.47304 * 30.00991 * 20 19 18 32 32 H 1.08997 * 109.47437 * 150.02057 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4010 2.6803 -1.3701 15 7 -0.4586 2.6464 -0.3560 16 6 -1.6476 3.2037 -0.4635 17 7 -2.0368 3.8029 -1.5709 18 6 -1.2380 3.8731 -2.6263 19 6 0.0200 3.3072 -2.5581 20 6 0.9580 3.3651 -3.7362 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 5.8770 0.4826 2.1132 27 1 2.2718 2.1232 -1.9978 28 1 -2.3238 3.1646 0.3777 29 1 -1.5669 4.3670 -3.5287 30 1 0.8028 2.4901 -4.3675 31 1 0.7614 4.2687 -4.3131 32 1 1.9881 3.3780 -3.3802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603341993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:33 Heat of formation + Delta-G solvation = 50.473266 kcal Electronic energy + Delta-G solvation = -15247.025757 eV Core-core repulsion = 12821.872422 eV Total energy + Delta-G solvation = -2425.153335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55085 -36.82378 -33.79877 -33.15177 -31.93373 -30.55323 -27.61088 -26.92063 -23.43131 -22.51004 -22.24713 -20.21164 -18.19950 -16.89224 -16.42556 -15.37418 -14.83635 -14.37592 -14.04946 -13.82342 -13.40235 -13.11530 -12.83602 -12.62588 -12.28006 -12.02804 -11.82261 -11.16068 -11.08848 -10.67251 -10.51955 -10.30506 -9.89543 -9.53832 -9.32750 -9.16281 -8.71807 -8.59933 -7.34759 -6.25045 -4.28051 1.45050 1.88436 3.20319 3.32411 3.36504 3.81770 4.27698 4.34380 4.65644 4.80385 5.08620 5.11848 5.27143 5.50181 5.73430 5.81819 5.92415 5.99301 6.10580 6.14719 6.21381 6.57848 6.67426 6.72690 6.88316 6.91051 7.18229 7.38054 7.44578 7.76396 8.20685 8.39618 8.70967 8.83916 9.34965 10.87048 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037857 B = 0.009252 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.452043 B = 3025.753043 C = 3427.704866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.247 3.753 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.674 5.674 14 C 0.445 3.555 15 N -0.566 5.566 16 C 0.323 3.677 17 N -0.582 5.582 18 C 0.166 3.834 19 C -0.275 4.275 20 C -0.093 4.093 21 H 0.058 0.942 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.268 0.732 27 H 0.406 0.594 28 H 0.185 0.815 29 H 0.154 0.846 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 2.433 -6.421 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.143 3.857 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.182 1.182 13 N -0.301 5.301 14 C 0.198 3.802 15 N -0.291 5.291 16 C 0.033 3.967 17 N -0.302 5.302 18 C 0.005 3.995 19 C -0.287 4.287 20 C -0.151 4.151 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.243 0.757 28 H 0.202 0.798 29 H 0.171 0.829 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.676 2.225 -5.361 12.152 hybrid contribution 0.453 -0.513 -0.189 0.710 sum -10.224 1.712 -5.551 11.758 Atomic orbital electron populations 1.21853 0.96988 0.98757 1.02002 1.22285 0.94403 0.99988 1.00990 1.19219 0.95464 0.88474 0.82513 0.92816 1.21047 0.88678 1.39973 1.07930 0.90357 1.24829 0.94888 0.95084 0.97690 1.69867 1.08737 1.44384 1.29831 0.86879 0.81003 0.79910 0.80806 1.20293 1.22179 1.18246 1.45196 1.10881 1.55845 1.18227 1.18554 0.86927 0.86480 0.88215 1.68237 1.05010 1.24840 1.30966 1.24520 0.90170 0.87453 0.94519 1.68329 1.37181 1.23099 1.01572 1.22570 0.88481 0.92217 0.96219 1.20871 0.99727 1.10282 0.97776 1.20424 0.97839 1.01976 0.94884 0.92317 0.95187 0.93587 0.92716 0.92570 0.92238 0.75695 0.79850 0.82924 0.91724 0.91581 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.45 37.16 0.31 -2.35 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.12 16 3 C 0.25 5.68 1.84 -69.08 -0.13 5.55 16 4 H 0.05 1.34 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 9 Si 0.88 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.28 -6.49 6.83 56.52 0.39 -6.11 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 13 N -0.67 -13.25 5.06 -54.90 -0.28 -13.53 16 14 C 0.45 8.15 6.04 -154.78 -0.94 7.22 16 15 N -0.57 -10.54 6.58 -13.81 -0.09 -10.63 16 16 C 0.32 5.21 12.28 -92.20 -1.13 4.08 16 17 N -0.58 -9.19 10.43 -14.67 -0.15 -9.35 16 18 C 0.17 2.38 10.99 -17.29 -0.19 2.19 16 19 C -0.28 -4.19 5.93 -104.15 -0.62 -4.81 16 20 C -0.09 -1.12 9.64 36.00 0.35 -0.77 16 21 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.88 5.59 -51.93 -0.29 0.59 16 24 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.41 7.35 6.67 -40.82 -0.27 7.07 16 28 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.06 0.80 6.67 -51.93 -0.35 0.46 16 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -29.78 257.35 -6.87 -36.66 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.96 Total: 5.83 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.90 Total: -4.61 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.25 Total: -58.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.78 -6.87 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.129 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds