Wall clock time and date at job start Sun Mar 29 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.38548 * 119.99997 * 84.99839 * 13 3 2 15 15 N 1.32985 * 120.53133 * 359.71899 * 14 13 3 16 16 C 1.31756 * 120.68748 * 179.76350 * 15 14 13 17 17 N 1.31785 * 121.82968 * 0.53056 * 16 15 14 18 18 C 1.32552 * 121.00989 * 359.73020 * 17 16 15 19 19 C 1.38115 * 119.20215 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.83685 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 27 27 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 28 28 H 1.07997 * 119.08478 * 180.26224 * 16 15 14 29 29 H 1.08003 * 120.39926 * 180.02562 * 18 17 16 30 30 H 1.09005 * 109.46846 * 270.01673 * 20 19 18 31 31 H 1.08999 * 109.47304 * 30.00991 * 20 19 18 32 32 H 1.08997 * 109.47437 * 150.02057 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4010 2.6803 -1.3701 15 7 -0.4586 2.6464 -0.3560 16 6 -1.6476 3.2037 -0.4635 17 7 -2.0368 3.8029 -1.5709 18 6 -1.2380 3.8731 -2.6263 19 6 0.0200 3.3072 -2.5581 20 6 0.9580 3.3651 -3.7362 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 5.8770 0.4826 2.1132 27 1 2.2718 2.1232 -1.9978 28 1 -2.3238 3.1646 0.3777 29 1 -1.5669 4.3670 -3.5287 30 1 0.8028 2.4901 -4.3675 31 1 0.7614 4.2687 -4.3131 32 1 1.9881 3.3780 -3.3802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603341993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:33 Heat of formation + Delta-G solvation = 31.856728 kcal Electronic energy + Delta-G solvation = -15247.833031 eV Core-core repulsion = 12821.872422 eV Total energy + Delta-G solvation = -2425.960609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82419 -38.40360 -35.28730 -34.56158 -33.76084 -31.97734 -29.29256 -28.16594 -25.01507 -24.10267 -23.46251 -21.88240 -19.77075 -18.33423 -18.16688 -17.07921 -16.26229 -15.73136 -15.56671 -15.16802 -15.09146 -14.49645 -14.26615 -13.87409 -13.74896 -13.56817 -13.12947 -12.95897 -12.73548 -12.35875 -12.20560 -11.71793 -11.52058 -11.28684 -11.17936 -10.85300 -10.46332 -9.88878 -8.75967 -8.39062 -6.45192 0.26121 0.59337 1.28144 1.35681 1.46144 2.25917 2.39555 2.96741 3.10673 3.52925 3.61091 3.92510 4.20063 4.25088 4.34765 4.36285 4.52565 4.76581 4.83478 4.86079 5.04681 5.08660 5.15512 5.20752 5.25335 5.46143 5.51158 5.65456 5.94276 6.06533 6.50354 6.56207 6.87686 7.21437 7.54182 8.76401 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037857 B = 0.009252 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.452043 B = 3025.753043 C = 3427.704866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.260 3.740 4 H 0.034 0.966 5 C -0.538 4.538 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.937 5.937 9 Si 0.942 3.058 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.249 1.249 13 N -0.685 5.685 14 C 0.422 3.578 15 N -0.592 5.592 16 C 0.315 3.685 17 N -0.584 5.584 18 C 0.168 3.832 19 C -0.272 4.272 20 C -0.091 4.091 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.270 0.730 27 H 0.410 0.590 28 H 0.210 0.790 29 H 0.193 0.807 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 2.539 -7.252 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.175 4.175 3 C 0.155 3.845 4 H 0.052 0.948 5 C -0.576 4.576 6 H 0.066 0.934 7 C -0.173 4.173 8 N -0.576 5.576 9 Si 0.768 3.232 10 H -0.189 1.189 11 H -0.223 1.223 12 H -0.173 1.173 13 N -0.315 5.315 14 C 0.177 3.823 15 N -0.317 5.317 16 C 0.026 3.974 17 N -0.304 5.304 18 C 0.006 3.994 19 C -0.282 4.282 20 C -0.149 4.149 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.248 0.752 28 H 0.226 0.774 29 H 0.210 0.790 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.017 2.351 -6.220 14.617 hybrid contribution 1.119 -0.425 -0.048 1.198 sum -11.898 1.926 -6.268 13.585 Atomic orbital electron populations 1.21709 0.94782 1.00003 1.01762 1.22196 0.96294 0.98579 1.00420 1.18779 0.92569 0.89531 0.83620 0.94790 1.21338 0.90822 1.38605 1.06840 0.93383 1.25611 0.95821 0.95823 1.00044 1.69992 1.10509 1.46199 1.30893 0.85953 0.79627 0.79747 0.77841 1.18897 1.22287 1.17345 1.44878 1.12079 1.57310 1.17209 1.18826 0.86423 0.87405 0.89625 1.68197 1.05950 1.25806 1.31732 1.25041 0.89797 0.87073 0.95534 1.68417 1.37454 1.22626 1.01860 1.23223 0.87761 0.91364 0.97005 1.21206 1.00606 1.08886 0.97531 1.20494 0.96437 1.03953 0.94047 0.92768 0.93098 0.93599 0.93827 0.92515 0.92124 0.75241 0.77382 0.79023 0.90432 0.88826 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.45 71.98 0.61 -3.95 16 2 C -0.14 -5.76 5.11 30.59 0.16 -5.60 16 3 C 0.26 11.99 1.84 44.24 0.08 12.07 16 4 H 0.03 1.71 6.63 -2.38 -0.02 1.69 16 5 C -0.54 -29.44 9.31 25.60 0.24 -29.21 16 6 H 0.05 2.84 7.98 -2.91 -0.02 2.82 16 7 C 0.03 1.49 5.45 84.66 0.46 1.95 16 8 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 9 Si 0.94 44.25 24.41 68.60 1.67 45.93 16 10 H -0.26 -11.73 6.83 99.48 0.68 -11.05 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 13 N -0.68 -26.85 5.06 -327.62 -1.66 -28.51 16 14 C 0.42 14.95 6.04 133.16 0.80 15.75 16 15 N -0.59 -21.23 6.58 -197.61 -1.30 -22.53 16 16 C 0.31 9.48 12.28 180.90 2.22 11.70 16 17 N -0.58 -16.77 10.43 -200.31 -2.09 -18.86 16 18 C 0.17 4.22 10.99 84.55 0.93 5.15 16 19 C -0.27 -7.62 5.93 -19.56 -0.12 -7.74 16 20 C -0.09 -1.95 9.64 71.23 0.69 -1.26 16 21 H 0.05 2.01 7.68 -2.39 -0.02 1.99 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.66 5.59 -2.38 -0.01 1.65 16 24 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 25 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 27 H 0.41 14.98 6.67 -92.71 -0.62 14.36 16 28 H 0.21 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.05 1.27 6.67 -2.39 -0.02 1.26 16 Total: -1.00 -64.46 257.35 3.42 -61.03 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.43 Total: 20.38 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.07 Total: -1.13 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -4.75 Total: -126.21 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.93 kcal Total: -64.46 3.42 -61.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.889 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds