Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99833 * 2 1 4 4 H 1.48501 * 109.47391 * 272.94663 * 3 2 1 5 5 H 1.48506 * 109.47359 * 32.94655 * 3 2 1 6 6 H 1.48505 * 109.46931 * 152.94305 * 3 2 1 7 7 C 1.38814 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 339.33711 * 7 2 1 9 9 N 1.36929 * 120.00180 * 159.34574 * 7 2 1 10 10 C 1.46929 * 120.63034 * 332.62475 * 9 7 2 11 11 C 1.53192 * 108.77706 * 233.58916 * 10 9 7 12 12 C 1.53042 * 109.31278 * 305.36377 * 11 10 9 13 13 C 1.53047 * 109.53851 * 61.36574 * 12 11 10 14 14 H 1.08997 * 109.49705 * 58.61357 * 13 12 11 15 15 C 1.50699 * 109.50271 * 178.68296 * 13 12 11 16 16 C 1.39869 * 125.89606 * 84.99561 * 15 13 12 17 17 C 1.35319 * 107.91716 * 179.76361 * 16 15 13 18 18 N 1.34948 * 107.74652 * 0.42550 * 17 16 15 19 19 H 0.96994 * 126.03869 * 179.84361 * 18 17 16 20 20 N 1.30832 * 125.89554 * 265.02919 * 15 13 12 21 21 C 1.46932 * 120.63394 * 152.60505 * 9 7 2 22 22 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58345 * 113.80344 * 10 9 7 24 24 H 1.08995 * 109.70524 * 353.45018 * 10 9 7 25 25 H 1.09000 * 109.49973 * 185.41551 * 11 10 9 26 26 H 1.08998 * 109.52590 * 65.32983 * 11 10 9 27 27 H 1.08998 * 109.46275 * 301.35090 * 12 11 10 28 28 H 1.08995 * 109.46231 * 181.38497 * 12 11 10 29 29 H 1.08004 * 126.04191 * 0.02639 * 16 15 13 30 30 H 1.08001 * 126.12755 * 180.26623 * 17 16 15 31 31 H 1.09004 * 109.58240 * 6.62706 * 21 9 7 32 32 H 1.08996 * 109.58450 * 246.20235 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0825 -1.3982 5 1 1.4801 2.6339 0.7615 6 1 3.5775 1.4230 0.6369 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1075 0.3291 9 7 3.3136 -1.2400 -0.4188 10 6 3.8173 -0.2583 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0214 13 6 4.8754 -2.9899 -1.0925 14 1 4.1092 -3.5396 -1.6392 15 6 5.9212 -3.9509 -0.5889 16 6 6.7547 -3.7507 0.5163 17 6 7.5469 -4.8404 0.6431 18 7 7.2325 -5.6956 -0.3523 19 1 7.6416 -6.5604 -0.5121 20 7 6.2067 -5.1164 -1.1104 21 6 4.2352 -2.2629 0.0943 22 1 -0.4850 0.8400 -0.0004 23 1 4.5597 0.3804 -0.9106 24 1 2.9923 0.3521 -1.7562 25 1 4.9247 -0.2920 -3.2390 26 1 3.6999 -1.5757 -3.0925 27 1 6.2781 -1.3983 -1.4676 28 1 6.0066 -2.4807 -2.8540 29 1 6.7617 -2.8819 1.1578 30 1 8.2981 -4.9965 1.4032 31 1 3.6842 -2.9772 0.7062 32 1 5.0116 -1.7876 0.6937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603833638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = 92.391782 kcal Electronic energy + Delta-G solvation = -15141.507339 eV Core-core repulsion = 12718.171727 eV Total energy + Delta-G solvation = -2423.335612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02770 -37.75053 -33.57237 -31.86743 -30.76602 -29.85637 -29.20364 -25.18932 -23.41482 -21.93538 -21.25014 -20.02512 -18.68170 -17.92261 -16.63202 -15.30344 -14.57359 -14.47234 -13.86535 -13.63861 -13.45160 -13.09814 -13.01901 -12.69603 -12.14375 -11.82395 -11.39739 -10.86800 -10.75033 -10.59939 -10.24165 -10.15678 -9.91025 -9.61116 -9.38815 -9.09573 -8.60446 -8.52919 -6.91366 -5.89054 -3.24489 2.02413 2.98852 3.00412 3.37274 3.53039 3.56722 4.58830 4.74050 4.93348 5.16725 5.34518 5.51245 5.53364 5.59121 5.81395 5.91198 5.96996 6.11043 6.20184 6.23906 6.40905 6.46999 6.63260 6.72737 6.76671 6.80282 6.85374 7.06221 7.38140 7.87244 8.02593 8.39012 9.00452 9.78261 10.16207 11.27001 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047863 B = 0.007684 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.866801 B = 3643.167983 C = 3785.507499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.123 3.877 11 C -0.135 4.135 12 C -0.095 4.095 13 C -0.030 4.030 14 H 0.085 0.915 15 C 0.100 3.900 16 C -0.262 4.262 17 C 0.048 3.952 18 N -0.488 5.488 19 H 0.434 0.566 20 N -0.300 5.300 21 C 0.163 3.837 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.064 0.936 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 -6.785 -0.603 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.134 4.134 13 C -0.052 4.052 14 H 0.103 0.897 15 C -0.067 4.067 16 C -0.292 4.292 17 C -0.099 4.099 18 N -0.195 5.195 19 H 0.277 0.723 20 N -0.123 5.123 21 C 0.036 3.964 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.166 0.834 30 H 0.189 0.811 31 H 0.082 0.918 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.134 -7.520 -1.472 16.963 hybrid contribution 0.951 1.017 0.650 1.536 sum 16.085 -6.503 -0.822 17.369 Atomic orbital electron populations 1.69844 1.05738 1.26481 1.53217 1.25259 0.95204 0.97561 0.99565 0.86943 0.80058 0.84645 0.76981 1.21645 1.23267 1.19501 1.18934 0.84946 0.94800 1.39972 0.89682 1.44335 1.08683 1.32978 1.46801 1.21368 0.97262 0.92043 0.89540 1.22025 0.98093 0.98520 0.98757 1.21370 0.97670 0.96436 0.97912 1.20223 0.93343 0.92831 0.98841 0.89681 1.22515 0.97030 0.92904 0.94275 1.21520 1.02453 1.01721 1.03495 1.22526 1.01216 0.91827 0.94345 1.46329 1.31199 1.18412 1.23571 0.72301 1.77321 1.05610 1.10832 1.18572 1.20872 0.92359 0.91041 0.92129 0.92831 0.95679 0.90996 0.92627 0.91594 0.92335 0.92981 0.83420 0.81069 0.91785 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.97 55.49 0.78 -27.42 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 22.58 24.34 -169.99 -4.14 18.44 16 4 H -0.29 -7.12 6.62 56.52 0.37 -6.74 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.75 6.63 56.52 0.37 -6.38 16 7 C -0.26 -7.32 10.04 -15.06 -0.15 -7.48 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 N -0.60 -14.61 2.77 -172.32 -0.48 -15.09 16 10 C 0.12 2.73 4.20 -3.71 -0.02 2.71 16 11 C -0.13 -2.46 6.08 -26.61 -0.16 -2.62 16 12 C -0.10 -1.59 5.15 -26.69 -0.14 -1.73 16 13 C -0.03 -0.54 2.80 -91.65 -0.26 -0.80 16 14 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 15 C 0.10 1.64 6.13 -82.41 -0.51 1.14 16 16 C -0.26 -3.65 9.96 -40.01 -0.40 -4.05 16 17 C 0.05 0.52 11.99 -17.22 -0.21 0.31 16 18 N -0.49 -5.73 7.36 30.45 0.22 -5.50 16 19 H 0.43 3.45 8.96 -182.61 -1.64 1.81 16 20 N -0.30 -4.84 12.70 33.67 0.43 -4.41 16 21 C 0.16 3.30 5.49 -3.71 -0.02 3.28 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 24 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.15 1.92 7.29 -52.48 -0.38 1.54 16 30 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 32 H 0.03 0.55 7.04 -51.93 -0.37 0.18 16 LS Contribution 256.51 15.07 3.87 3.87 Total: -1.00 -32.81 256.51 -6.81 -39.63 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.55 Total: -0.86 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.94 Total: -8.65 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.95 Total: -52.42 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.81 -6.81 -39.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603833638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.020 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds