Wall clock time and date at job start Sun Mar 29 2020 22:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99833 * 2 1 4 4 H 1.48501 * 109.47391 * 272.94663 * 3 2 1 5 5 H 1.48506 * 109.47359 * 32.94655 * 3 2 1 6 6 H 1.48505 * 109.46931 * 152.94305 * 3 2 1 7 7 C 1.38814 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 339.33711 * 7 2 1 9 9 N 1.36929 * 120.00180 * 159.34574 * 7 2 1 10 10 C 1.46929 * 120.63034 * 332.62475 * 9 7 2 11 11 C 1.53192 * 108.77706 * 233.58916 * 10 9 7 12 12 C 1.53042 * 109.31278 * 305.36377 * 11 10 9 13 13 C 1.53047 * 109.53851 * 61.36574 * 12 11 10 14 14 H 1.08997 * 109.49705 * 58.61357 * 13 12 11 15 15 C 1.50699 * 109.50271 * 178.68296 * 13 12 11 16 16 C 1.39869 * 125.89606 * 84.99561 * 15 13 12 17 17 C 1.35319 * 107.91716 * 179.76361 * 16 15 13 18 18 N 1.34948 * 107.74652 * 0.42550 * 17 16 15 19 19 H 0.96994 * 126.03869 * 179.84361 * 18 17 16 20 20 N 1.30832 * 125.89554 * 265.02919 * 15 13 12 21 21 C 1.46932 * 120.63394 * 152.60505 * 9 7 2 22 22 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58345 * 113.80344 * 10 9 7 24 24 H 1.08995 * 109.70524 * 353.45018 * 10 9 7 25 25 H 1.09000 * 109.49973 * 185.41551 * 11 10 9 26 26 H 1.08998 * 109.52590 * 65.32983 * 11 10 9 27 27 H 1.08998 * 109.46275 * 301.35090 * 12 11 10 28 28 H 1.08995 * 109.46231 * 181.38497 * 12 11 10 29 29 H 1.08004 * 126.04191 * 0.02639 * 16 15 13 30 30 H 1.08001 * 126.12755 * 180.26623 * 17 16 15 31 31 H 1.09004 * 109.58240 * 6.62706 * 21 9 7 32 32 H 1.08996 * 109.58450 * 246.20235 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0825 -1.3982 5 1 1.4801 2.6339 0.7615 6 1 3.5775 1.4230 0.6369 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1075 0.3291 9 7 3.3136 -1.2400 -0.4188 10 6 3.8173 -0.2583 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0214 13 6 4.8754 -2.9899 -1.0925 14 1 4.1092 -3.5396 -1.6392 15 6 5.9212 -3.9509 -0.5889 16 6 6.7547 -3.7507 0.5163 17 6 7.5469 -4.8404 0.6431 18 7 7.2325 -5.6956 -0.3523 19 1 7.6416 -6.5604 -0.5121 20 7 6.2067 -5.1164 -1.1104 21 6 4.2352 -2.2629 0.0943 22 1 -0.4850 0.8400 -0.0004 23 1 4.5597 0.3804 -0.9106 24 1 2.9923 0.3521 -1.7562 25 1 4.9247 -0.2920 -3.2390 26 1 3.6999 -1.5757 -3.0925 27 1 6.2781 -1.3983 -1.4676 28 1 6.0066 -2.4807 -2.8540 29 1 6.7617 -2.8819 1.1578 30 1 8.2981 -4.9965 1.4032 31 1 3.6842 -2.9772 0.7062 32 1 5.0116 -1.7876 0.6937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603833638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:58 Heat of formation + Delta-G solvation = 68.953411 kcal Electronic energy + Delta-G solvation = -15142.523703 eV Core-core repulsion = 12718.171727 eV Total energy + Delta-G solvation = -2424.351976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.07890 -39.36495 -35.33296 -33.48056 -32.60162 -30.96300 -30.46746 -27.12723 -24.94555 -23.63153 -22.28970 -21.56495 -19.97690 -18.91179 -18.66111 -17.25328 -16.03641 -15.62433 -15.49269 -15.26334 -14.99394 -14.62484 -14.33385 -14.11498 -13.70203 -13.49435 -13.22732 -12.56149 -12.31130 -12.27539 -11.86193 -11.58413 -11.52230 -11.37414 -11.25773 -10.66962 -10.23923 -9.57337 -8.90889 -8.13874 -5.46137 1.04632 1.34105 1.45005 1.55377 1.89689 2.11044 2.45514 3.07361 3.34364 3.75793 3.97106 4.08642 4.17688 4.23951 4.45780 4.55526 4.67534 4.71878 4.83462 4.94993 5.01493 5.04908 5.08607 5.19508 5.26849 5.31400 5.55651 5.72511 5.89480 6.14754 6.58259 6.82117 6.93989 7.64659 8.04957 9.06173 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047863 B = 0.007684 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.866801 B = 3643.167983 C = 3785.507499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.036 4.036 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.311 1.311 6 H -0.256 1.256 7 C -0.252 4.252 8 H 0.047 0.953 9 N -0.620 5.620 10 C 0.116 3.884 11 C -0.128 4.128 12 C -0.087 4.087 13 C -0.020 4.020 14 H 0.057 0.943 15 C 0.081 3.919 16 C -0.291 4.291 17 C 0.078 3.922 18 N -0.474 5.474 19 H 0.451 0.549 20 N -0.339 5.339 21 C 0.165 3.835 22 H 0.262 0.738 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.154 0.846 30 H 0.224 0.776 31 H 0.045 0.955 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.159 -6.652 -0.537 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.240 1.240 6 H -0.180 1.180 7 C -0.381 4.381 8 H 0.064 0.936 9 N -0.344 5.344 10 C -0.008 4.008 11 C -0.167 4.167 12 C -0.125 4.125 13 C -0.043 4.043 14 H 0.076 0.924 15 C -0.085 4.085 16 C -0.320 4.320 17 C -0.070 4.070 18 N -0.183 5.183 19 H 0.298 0.702 20 N -0.163 5.163 21 C 0.039 3.961 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.240 0.760 31 H 0.064 0.936 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.770 -7.418 -1.432 20.233 hybrid contribution -0.125 0.794 0.660 1.040 sum 18.645 -6.625 -0.773 19.802 Atomic orbital electron populations 1.69984 1.07560 1.27288 1.55717 1.25926 0.95851 1.01181 1.00092 0.85843 0.78873 0.79676 0.77678 1.19918 1.23996 1.18035 1.18845 0.86855 0.93528 1.38889 0.93569 1.44449 1.07788 1.34338 1.47806 1.21476 0.96896 0.92007 0.90434 1.21947 0.98146 0.99021 0.97584 1.21319 0.97209 0.95832 0.98178 1.19909 0.93443 0.93277 0.97625 0.92443 1.22259 0.97502 0.93057 0.95708 1.21711 1.03391 1.03494 1.03448 1.23221 1.00247 0.89811 0.93731 1.46360 1.29878 1.19096 1.22999 0.70249 1.77221 1.07625 1.11122 1.20378 1.20935 0.91871 0.90049 0.93200 0.92938 0.94157 0.93268 0.89367 0.93133 0.90834 0.91492 0.82830 0.76010 0.93617 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.60 13.97 21.65 0.30 -61.30 16 2 C -0.04 -2.15 5.23 84.86 0.44 -1.71 16 3 Si 0.95 46.95 24.34 68.60 1.67 48.62 16 4 H -0.27 -12.65 6.62 99.48 0.66 -11.99 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 6 H -0.26 -11.94 6.63 99.48 0.66 -11.28 16 7 C -0.25 -14.77 10.04 84.04 0.84 -13.93 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 9 N -0.62 -30.05 2.77 -699.08 -1.94 -31.99 16 10 C 0.12 4.97 4.20 86.36 0.36 5.33 16 11 C -0.13 -4.41 6.08 30.67 0.19 -4.22 16 12 C -0.09 -2.71 5.15 30.62 0.16 -2.55 16 13 C -0.02 -0.72 2.80 -11.46 -0.03 -0.75 16 14 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.08 2.54 6.13 43.10 0.26 2.80 16 16 C -0.29 -7.29 9.96 21.99 0.22 -7.07 16 17 C 0.08 1.37 11.99 83.54 1.00 2.37 16 18 N -0.47 -9.61 7.36 -57.59 -0.42 -10.03 16 19 H 0.45 5.61 8.96 -213.33 -1.91 3.70 16 20 N -0.34 -10.40 12.70 -47.39 -0.60 -11.00 16 21 C 0.17 6.68 5.49 86.36 0.47 7.15 16 22 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 23 H 0.04 1.62 7.07 -2.39 -0.02 1.60 16 24 H 0.05 2.32 4.50 -2.39 -0.01 2.31 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.15 3.55 7.29 -2.91 -0.02 3.53 16 30 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 32 H 0.05 1.78 7.04 -2.39 -0.02 1.76 16 Total: -1.00 -73.44 256.51 2.05 -71.39 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.89 Total: 6.89 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 3.92 Total: -12.57 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -2.66 Total: -114.32 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -73.44 2.05 -71.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603833638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.342 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds