Wall clock time and date at job start Sun Mar 29 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99422 * 2 1 4 4 H 1.48495 * 109.47368 * 272.92437 * 3 2 1 5 5 H 1.48503 * 109.47222 * 32.92569 * 3 2 1 6 6 H 1.48500 * 109.46936 * 152.92249 * 3 2 1 7 7 C 1.38810 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 339.36090 * 7 2 1 9 9 N 1.36936 * 119.99851 * 159.36456 * 7 2 1 10 10 C 1.46924 * 120.62963 * 152.61616 * 9 7 2 11 11 C 1.53192 * 108.77596 * 126.38671 * 10 9 7 12 12 C 1.53034 * 109.31164 * 54.63748 * 11 10 9 13 13 C 1.53047 * 109.53745 * 298.63551 * 12 11 10 14 14 H 1.09000 * 109.49641 * 301.37903 * 13 12 11 15 15 C 1.50704 * 109.49878 * 181.31843 * 13 12 11 16 16 C 1.39869 * 125.89760 * 275.29649 * 15 13 12 17 17 C 1.35313 * 107.92032 * 180.14048 * 16 15 13 18 18 N 1.34952 * 107.74682 * 359.64277 * 17 16 15 19 19 H 0.96995 * 126.03972 * 180.20141 * 18 17 16 20 20 N 1.30838 * 125.89909 * 95.03873 * 15 13 12 21 21 C 1.46929 * 120.60483 * 332.59023 * 9 7 2 22 22 H 0.96994 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.09010 * 109.58844 * 6.60184 * 10 9 7 24 24 H 1.09002 * 109.70601 * 246.24509 * 10 9 7 25 25 H 1.08997 * 109.49849 * 294.68402 * 11 10 9 26 26 H 1.09004 * 109.52385 * 174.60165 * 11 10 9 27 27 H 1.09005 * 109.46347 * 178.61467 * 12 11 10 28 28 H 1.08999 * 109.45244 * 58.64442 * 12 11 10 29 29 H 1.08001 * 126.03893 * 0.02562 * 16 15 13 30 30 H 1.07998 * 126.13176 * 179.90150 * 17 16 15 31 31 H 1.09000 * 109.55836 * 113.81206 * 21 9 7 32 32 H 1.09004 * 109.61618 * 353.38167 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4797 2.6341 0.7610 6 1 3.5772 1.4233 0.6373 7 6 2.0104 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3306 9 7 3.3138 -1.2402 -0.4174 10 6 4.2351 -2.2628 0.0966 11 6 4.8752 -2.9908 -1.0896 12 6 5.5291 -1.9660 -2.0193 13 6 4.4624 -1.0097 -2.5579 14 1 3.7001 -1.5780 -3.0908 15 6 5.1020 -0.0210 -3.4985 16 6 5.7335 1.1713 -3.1298 17 6 6.1724 1.7760 -4.2579 18 7 5.8378 0.9902 -5.3027 19 1 6.0281 1.1708 -6.2366 20 7 5.1665 -0.1321 -4.8005 21 6 3.8169 -0.2593 -1.3888 22 1 -0.4850 0.8400 0.0004 23 1 3.6840 -2.9765 0.7091 24 1 5.0119 -1.7893 0.6970 25 1 4.1087 -3.5404 -1.6358 26 1 5.6315 -3.6860 -0.7253 27 1 6.0066 -2.4832 -2.8515 28 1 6.2781 -1.3997 -1.4658 29 1 5.8486 1.5444 -2.1228 30 1 6.7001 2.7167 -4.3121 31 1 4.5590 0.3801 -0.9107 32 1 2.9903 0.3486 -1.7566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603833639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:02 Heat of formation + Delta-G solvation = 92.343394 kcal Electronic energy + Delta-G solvation = -15334.020887 eV Core-core repulsion = 12910.683177 eV Total energy + Delta-G solvation = -2423.337710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97710 -37.75017 -33.42334 -32.12147 -30.62063 -29.81757 -29.17228 -25.19068 -23.22941 -22.25625 -21.24343 -19.63876 -18.80795 -17.91705 -16.66953 -15.25930 -14.49757 -14.29224 -14.10888 -13.65220 -13.43647 -13.05449 -12.91545 -12.63715 -12.15307 -11.86326 -11.45650 -10.90518 -10.64242 -10.50086 -10.34821 -10.00578 -9.87000 -9.74864 -9.41811 -9.04307 -8.56950 -8.48676 -6.90954 -5.89852 -3.25232 2.07597 3.03950 3.05772 3.39733 3.52734 3.56014 4.58614 4.76977 4.98063 5.20074 5.35514 5.47176 5.55063 5.63302 5.82345 5.94818 6.00388 6.11937 6.22766 6.23508 6.40209 6.45174 6.63391 6.72760 6.77684 6.78923 6.89699 7.06529 7.43683 7.92298 8.02242 8.38767 8.99878 9.77830 10.16055 11.26094 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.011488 C = 0.008981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.900049 B = 2436.769814 C = 3116.929737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.147 3.853 11 C -0.136 4.136 12 C -0.095 4.095 13 C -0.030 4.030 14 H 0.086 0.914 15 C 0.100 3.900 16 C -0.265 4.265 17 C 0.049 3.951 18 N -0.487 5.487 19 H 0.434 0.566 20 N -0.299 5.299 21 C 0.140 3.860 22 H 0.262 0.738 23 H 0.063 0.937 24 H 0.023 0.977 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.030 0.970 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 1.675 -6.903 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.709 3.291 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.328 5.328 10 C 0.021 3.979 11 C -0.175 4.175 12 C -0.134 4.134 13 C -0.052 4.052 14 H 0.105 0.895 15 C -0.068 4.068 16 C -0.294 4.294 17 C -0.098 4.098 18 N -0.195 5.195 19 H 0.277 0.723 20 N -0.122 5.122 21 C 0.014 3.986 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.190 0.810 31 H 0.048 0.952 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.324 1.060 -7.861 15.507 hybrid contribution 0.758 1.819 0.080 1.972 sum 14.082 2.879 -7.782 16.345 Atomic orbital electron populations 1.69842 1.05743 1.26507 1.53043 1.25281 0.95220 0.97598 0.99454 0.86986 0.80158 0.84776 0.77190 1.21363 1.23252 1.19343 1.18932 0.85040 0.94785 1.39987 0.89614 1.44340 1.08786 1.33738 1.45928 1.20963 0.92388 0.91249 0.93324 1.22025 0.99529 0.97516 0.98396 1.21370 0.96903 0.96668 0.98461 1.20264 0.96876 0.94028 0.94041 0.89521 1.22540 0.96711 0.96080 0.91446 1.21516 1.09997 0.98388 0.99508 1.22503 1.01530 0.97774 0.88011 1.46311 1.47041 1.17345 1.08764 0.72288 1.77306 1.17803 1.05827 1.11292 1.21329 0.97160 0.91739 0.88378 0.92825 0.91879 0.95891 0.91832 0.92505 0.92962 0.92329 0.83647 0.81016 0.95201 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.97 55.49 0.78 -27.55 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.73 24.34 -169.99 -4.14 18.60 16 4 H -0.29 -7.25 6.62 56.52 0.37 -6.88 16 5 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.27 -6.73 6.64 56.52 0.38 -6.35 16 7 C -0.26 -7.36 10.03 -15.06 -0.15 -7.51 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 N -0.60 -14.65 2.77 -172.32 -0.48 -15.13 16 10 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 11 C -0.14 -2.27 6.08 -26.61 -0.16 -2.44 16 12 C -0.10 -1.60 5.15 -26.69 -0.14 -1.74 16 13 C -0.03 -0.58 2.80 -91.65 -0.26 -0.83 16 14 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 15 C 0.10 1.82 6.13 -82.40 -0.51 1.32 16 16 C -0.26 -4.24 9.96 -40.01 -0.40 -4.64 16 17 C 0.05 0.61 11.99 -17.22 -0.21 0.41 16 18 N -0.49 -6.39 7.36 30.45 0.22 -6.17 16 19 H 0.43 3.94 8.96 -182.61 -1.64 2.30 16 20 N -0.30 -5.26 12.70 33.67 0.43 -4.83 16 21 C 0.14 3.17 3.18 -3.71 -0.01 3.15 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.15 2.24 7.30 -52.49 -0.38 1.86 16 30 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.03 0.66 5.98 -51.93 -0.31 0.35 16 32 H 0.07 1.84 4.50 -51.93 -0.23 1.61 16 LS Contribution 256.53 15.07 3.87 3.87 Total: -1.00 -33.16 256.53 -6.81 -39.97 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.55 Total: 0.04 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.94 Total: -8.81 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.95 Total: -53.67 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.16 -6.81 -39.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603833639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.313 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds