Wall clock time and date at job start Sun Mar 29 2020 22:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99422 * 2 1 4 4 H 1.48495 * 109.47368 * 272.92437 * 3 2 1 5 5 H 1.48503 * 109.47222 * 32.92569 * 3 2 1 6 6 H 1.48500 * 109.46936 * 152.92249 * 3 2 1 7 7 C 1.38810 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 339.36090 * 7 2 1 9 9 N 1.36936 * 119.99851 * 159.36456 * 7 2 1 10 10 C 1.46924 * 120.62963 * 152.61616 * 9 7 2 11 11 C 1.53192 * 108.77596 * 126.38671 * 10 9 7 12 12 C 1.53034 * 109.31164 * 54.63748 * 11 10 9 13 13 C 1.53047 * 109.53745 * 298.63551 * 12 11 10 14 14 H 1.09000 * 109.49641 * 301.37903 * 13 12 11 15 15 C 1.50704 * 109.49878 * 181.31843 * 13 12 11 16 16 C 1.39869 * 125.89760 * 275.29649 * 15 13 12 17 17 C 1.35313 * 107.92032 * 180.14048 * 16 15 13 18 18 N 1.34952 * 107.74682 * 359.64277 * 17 16 15 19 19 H 0.96995 * 126.03972 * 180.20141 * 18 17 16 20 20 N 1.30838 * 125.89909 * 95.03873 * 15 13 12 21 21 C 1.46929 * 120.60483 * 332.59023 * 9 7 2 22 22 H 0.96994 * 120.00182 * 359.97438 * 1 2 3 23 23 H 1.09010 * 109.58844 * 6.60184 * 10 9 7 24 24 H 1.09002 * 109.70601 * 246.24509 * 10 9 7 25 25 H 1.08997 * 109.49849 * 294.68402 * 11 10 9 26 26 H 1.09004 * 109.52385 * 174.60165 * 11 10 9 27 27 H 1.09005 * 109.46347 * 178.61467 * 12 11 10 28 28 H 1.08999 * 109.45244 * 58.64442 * 12 11 10 29 29 H 1.08001 * 126.03893 * 0.02562 * 16 15 13 30 30 H 1.07998 * 126.13176 * 179.90150 * 17 16 15 31 31 H 1.09000 * 109.55836 * 113.81206 * 21 9 7 32 32 H 1.09004 * 109.61618 * 353.38167 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4797 2.6341 0.7610 6 1 3.5772 1.4233 0.6373 7 6 2.0104 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3306 9 7 3.3138 -1.2402 -0.4174 10 6 4.2351 -2.2628 0.0966 11 6 4.8752 -2.9908 -1.0896 12 6 5.5291 -1.9660 -2.0193 13 6 4.4624 -1.0097 -2.5579 14 1 3.7001 -1.5780 -3.0908 15 6 5.1020 -0.0210 -3.4985 16 6 5.7335 1.1713 -3.1298 17 6 6.1724 1.7760 -4.2579 18 7 5.8378 0.9902 -5.3027 19 1 6.0281 1.1708 -6.2366 20 7 5.1665 -0.1321 -4.8005 21 6 3.8169 -0.2593 -1.3888 22 1 -0.4850 0.8400 0.0004 23 1 3.6840 -2.9765 0.7091 24 1 5.0119 -1.7893 0.6970 25 1 4.1087 -3.5404 -1.6358 26 1 5.6315 -3.6860 -0.7253 27 1 6.0066 -2.4832 -2.8515 28 1 6.2781 -1.3997 -1.4658 29 1 5.8486 1.5444 -2.1228 30 1 6.7001 2.7167 -4.3121 31 1 4.5590 0.3801 -0.9107 32 1 2.9903 0.3486 -1.7566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603833639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:01 Heat of formation + Delta-G solvation = 68.488986 kcal Electronic energy + Delta-G solvation = -15335.055291 eV Core-core repulsion = 12910.683177 eV Total energy + Delta-G solvation = -2424.372115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14336 -39.37542 -35.24464 -33.71048 -32.49208 -31.01994 -30.49684 -27.12908 -24.78211 -23.98647 -22.36633 -21.18914 -20.21985 -19.00186 -18.70298 -17.20109 -15.95320 -15.74359 -15.54405 -15.38692 -14.98849 -14.49375 -14.37866 -14.07795 -13.88618 -13.49366 -13.28088 -12.59147 -12.30965 -12.23155 -11.76528 -11.70644 -11.48796 -11.39382 -11.32724 -10.70334 -10.26463 -9.64477 -8.90891 -8.16078 -5.47510 0.98248 1.32930 1.40520 1.50983 1.81966 2.05829 2.43644 3.04346 3.35570 3.72128 3.91850 4.04579 4.21197 4.23147 4.46047 4.50900 4.65176 4.70382 4.85255 4.88025 4.98293 5.06583 5.10614 5.19932 5.26449 5.29984 5.57871 5.66022 5.88538 6.14114 6.52835 6.75930 6.92967 7.63759 8.04759 9.03711 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.011488 C = 0.008981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.900049 B = 2436.769814 C = 3116.929737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.310 1.310 6 H -0.252 1.252 7 C -0.249 4.249 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.139 3.861 11 C -0.126 4.126 12 C -0.088 4.088 13 C -0.023 4.023 14 H 0.058 0.942 15 C 0.078 3.922 16 C -0.300 4.300 17 C 0.081 3.919 18 N -0.472 5.472 19 H 0.452 0.548 20 N -0.336 5.336 21 C 0.144 3.856 22 H 0.261 0.739 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.226 0.774 31 H 0.043 0.957 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.106 2.870 -7.796 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.773 3.227 4 H -0.207 1.207 5 H -0.239 1.239 6 H -0.176 1.176 7 C -0.378 4.378 8 H 0.072 0.928 9 N -0.345 5.345 10 C 0.015 3.985 11 C -0.165 4.165 12 C -0.126 4.126 13 C -0.045 4.045 14 H 0.077 0.923 15 C -0.089 4.089 16 C -0.329 4.329 17 C -0.067 4.067 18 N -0.181 5.181 19 H 0.299 0.701 20 N -0.160 5.160 21 C 0.018 3.982 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.242 0.758 31 H 0.061 0.939 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.690 2.227 -8.779 18.990 hybrid contribution -0.240 1.390 0.278 1.437 sum 16.450 3.617 -8.501 18.867 Atomic orbital electron populations 1.69977 1.07445 1.27166 1.55811 1.25936 0.95871 1.01110 1.00280 0.85923 0.79265 0.80210 0.77314 1.20735 1.23882 1.17551 1.18901 0.86920 0.93613 1.38411 0.92848 1.44496 1.08028 1.35074 1.46862 1.21198 0.92048 0.90435 0.94828 1.21940 0.99928 0.97704 0.96936 1.21337 0.96192 0.96153 0.98917 1.19987 0.97088 0.94374 0.93065 0.92338 1.22358 0.97935 0.96894 0.91691 1.21714 1.11794 0.98419 1.01013 1.23209 0.98934 0.98293 0.86275 1.46343 1.45544 1.16118 1.10108 0.70082 1.77204 1.19438 1.08209 1.11151 1.21246 0.96273 0.91525 0.89129 0.93035 0.92464 0.93983 0.93292 0.88681 0.91471 0.90924 0.83386 0.75766 0.93880 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.01 13.97 21.65 0.30 -61.70 16 2 C -0.04 -2.26 5.23 84.86 0.44 -1.82 16 3 Si 0.94 47.81 24.34 68.60 1.67 49.48 16 4 H -0.28 -13.79 6.62 99.48 0.66 -13.13 16 5 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 6 H -0.25 -11.88 6.64 99.48 0.66 -11.22 16 7 C -0.25 -14.56 10.03 84.03 0.84 -13.72 16 8 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 9 N -0.62 -30.07 2.77 -699.09 -1.94 -32.01 16 10 C 0.14 5.36 6.52 86.36 0.56 5.92 16 11 C -0.13 -3.97 6.08 30.67 0.19 -3.78 16 12 C -0.09 -2.73 5.15 30.62 0.16 -2.57 16 13 C -0.02 -0.87 2.80 -11.46 -0.03 -0.90 16 14 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.08 2.71 6.13 43.10 0.26 2.97 16 16 C -0.30 -8.73 9.96 21.99 0.22 -8.51 16 17 C 0.08 1.67 11.99 83.54 1.00 2.67 16 18 N -0.47 -10.74 7.36 -57.59 -0.42 -11.16 16 19 H 0.45 6.51 8.96 -213.34 -1.91 4.59 16 20 N -0.34 -11.21 12.70 -47.38 -0.60 -11.81 16 21 C 0.14 6.40 3.18 86.36 0.27 6.68 16 22 H 0.26 16.04 8.31 -92.71 -0.77 15.26 16 23 H 0.06 2.23 7.93 -2.38 -0.02 2.21 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.15 4.12 7.30 -2.91 -0.02 4.10 16 30 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.04 1.81 5.98 -2.39 -0.01 1.79 16 32 H 0.04 2.06 4.50 -2.38 -0.01 2.05 16 Total: -1.00 -74.46 256.53 2.05 -72.41 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -0.89 Total: 7.86 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 3.92 Total: -13.07 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -2.66 Total: -116.69 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.48 kcal Total: -74.46 2.05 -72.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603833639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.900 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds