Wall clock time and date at job start Sun Mar 29 2020 21:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34512 * 125.79139 * 2 1 4 4 C 1.41380 * 106.84260 * 180.29658 * 3 2 1 5 5 C 1.34515 * 106.84128 * 359.56906 * 4 3 2 6 6 C 1.50693 * 125.79062 * 180.11442 * 5 4 3 7 7 N 1.46501 * 109.47235 * 90.34254 * 6 5 4 8 8 C 1.36940 * 119.99673 * 89.99871 * 7 6 5 9 9 H 1.08004 * 119.99967 * 304.48171 * 8 7 6 10 10 C 1.38811 * 120.00041 * 124.47126 * 8 7 6 11 11 N 1.31619 * 119.99891 * 164.67572 * 10 8 7 12 12 Si 1.86798 * 119.99971 * 344.68700 * 10 8 7 13 13 H 1.48498 * 109.47532 * 91.90362 * 12 10 8 14 14 H 1.48501 * 109.47127 * 211.90657 * 12 10 8 15 15 H 1.48498 * 109.47199 * 331.90274 * 12 10 8 16 16 C 1.46494 * 120.00148 * 270.00026 * 7 6 5 17 17 C 1.53001 * 117.49514 * 183.06513 * 16 7 6 18 18 C 1.53009 * 117.49528 * 114.41016 * 16 7 6 19 19 O 1.34301 * 108.41672 * 0.43191 * 5 4 3 20 20 H 1.08994 * 109.47303 * 90.00198 * 1 2 3 21 21 H 1.09000 * 109.46863 * 210.00429 * 1 2 3 22 22 H 1.08999 * 109.47330 * 330.00238 * 1 2 3 23 23 H 1.08008 * 126.57692 * 0.03445 * 3 2 1 24 24 H 1.08004 * 126.57805 * 179.73596 * 4 3 2 25 25 H 1.09002 * 109.47555 * 210.34744 * 6 5 4 26 26 H 1.09005 * 109.47263 * 330.34644 * 6 5 4 27 27 H 0.97001 * 119.99491 * 180.02562 * 11 10 8 28 28 H 1.09000 * 115.55436 * 328.73790 * 16 7 6 29 29 H 1.08996 * 117.50458 * 0.02562 * 17 16 7 30 30 H 1.09002 * 117.49635 * 145.02170 * 17 16 7 31 31 H 1.09003 * 117.49167 * 214.97893 * 18 16 7 32 32 H 1.08996 * 117.49779 * 359.97323 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0070 5 6 3.5814 -0.7122 -0.0012 6 6 4.7705 -1.6378 -0.0029 7 7 5.1573 -1.9386 1.3778 8 6 4.6095 -3.0150 2.0232 9 1 3.5364 -3.1078 2.1034 10 6 5.4334 -3.9868 2.5742 11 7 4.9457 -4.8485 3.4415 12 14 7.2342 -4.0716 2.0851 13 1 8.0428 -3.2611 3.0308 14 1 7.6923 -5.4836 2.1262 15 1 7.3991 -3.5376 0.7093 16 6 6.1299 -1.0878 2.0680 17 6 6.5464 -1.4953 3.4827 18 6 5.6357 -0.2831 3.2719 19 8 2.2924 -1.0894 -0.0007 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.9665 2.1204 0.0005 24 1 4.5212 1.2433 -0.0129 25 1 4.5102 -2.5630 -0.5170 26 1 5.6035 -1.1584 -0.5172 27 1 5.5215 -5.5273 3.8268 28 1 6.8876 -0.6291 1.4327 29 1 6.0971 -2.3966 3.8997 30 1 7.5781 -1.3043 3.7782 31 1 6.0687 0.7049 3.4287 32 1 4.5869 -0.3864 3.5500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603851539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:58 Heat of formation + Delta-G solvation = 63.736756 kcal Electronic energy + Delta-G solvation = -15211.391644 eV Core-core repulsion = 12754.520706 eV Total energy + Delta-G solvation = -2456.870938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90361 -37.31398 -33.39458 -32.58428 -32.15284 -30.83099 -27.54128 -24.52398 -23.02765 -21.55479 -21.07146 -19.96223 -19.49139 -16.83900 -16.11164 -15.70571 -14.92883 -14.60933 -13.86111 -13.74537 -13.05203 -12.99549 -12.70723 -12.35469 -12.22295 -11.94777 -11.80156 -11.36733 -11.12015 -10.75858 -10.44745 -10.36381 -9.83161 -9.53084 -9.29664 -9.15277 -8.47329 -7.69752 -6.56828 -6.04963 -3.76047 2.33169 3.17896 3.37088 3.45764 3.52460 3.56503 4.49466 4.86653 4.92245 5.17274 5.29626 5.46877 5.54875 5.63357 5.68881 5.84139 5.90753 5.99582 6.08429 6.12329 6.37014 6.41501 6.51897 6.56194 6.57571 6.78403 7.03115 7.14614 7.30610 7.85346 8.06157 8.48449 8.93922 9.58596 10.04563 11.04768 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036026 B = 0.009334 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.032442 B = 2999.180658 C = 3255.674949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.214 4.214 4 C -0.227 4.227 5 C 0.010 3.990 6 C 0.215 3.785 7 N -0.562 5.562 8 C -0.288 4.288 9 H 0.071 0.929 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.886 3.114 13 H -0.269 1.269 14 H -0.303 1.303 15 H -0.270 1.270 16 C 0.106 3.894 17 C -0.196 4.196 18 C -0.208 4.208 19 O -0.166 6.166 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 9.546 -6.164 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 C -0.233 4.233 4 C -0.247 4.247 5 C -0.043 4.043 6 C 0.088 3.912 7 N -0.280 5.280 8 C -0.416 4.416 9 H 0.088 0.912 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.714 3.286 13 H -0.195 1.195 14 H -0.231 1.231 15 H -0.194 1.194 16 C -0.001 4.001 17 C -0.234 4.234 18 C -0.249 4.249 19 O -0.062 6.062 20 H 0.091 0.909 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.154 0.846 24 H 0.155 0.845 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.000 9.038 -6.060 11.064 hybrid contribution 0.965 0.259 0.088 1.003 sum -1.035 9.297 -5.971 11.098 Atomic orbital electron populations 1.20174 0.86115 1.03499 1.02639 1.22282 0.93803 0.84899 1.07988 1.21401 0.93190 0.98549 1.10149 1.21392 0.97378 0.94205 1.11775 1.24260 0.83493 0.95596 1.00989 1.19547 0.88229 0.95596 0.87788 1.43600 1.47821 1.28157 1.08442 1.18568 0.92463 0.97274 1.33335 0.91151 1.25831 0.98656 0.94405 0.95523 1.69869 1.36775 1.19007 1.27653 0.86776 0.85898 0.75844 0.80073 1.19478 1.23074 1.19434 1.21354 0.94701 0.96689 0.87382 1.23522 0.98239 1.00847 1.00809 1.23316 0.99874 0.93985 1.07705 1.84047 1.16884 1.34528 1.70744 0.90874 0.90844 0.90123 0.84616 0.84484 0.90615 0.90852 0.92423 0.89302 0.86217 0.90588 0.91028 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.42 36.00 0.38 -0.47 16 2 C -0.04 -0.68 7.32 -35.63 -0.26 -0.94 16 3 C -0.21 -3.58 10.81 -39.70 -0.43 -4.01 16 4 C -0.23 -4.12 10.81 -39.70 -0.43 -4.55 16 5 C 0.01 0.21 6.90 -35.63 -0.25 -0.04 16 6 C 0.22 4.41 6.24 -5.20 -0.03 4.38 16 7 N -0.56 -13.35 2.03 -167.02 -0.34 -13.69 16 8 C -0.29 -8.02 9.17 -15.06 -0.14 -8.16 16 9 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 10 C 0.06 1.65 3.74 -17.43 -0.07 1.59 16 11 N -0.89 -26.70 13.97 55.49 0.78 -25.92 16 12 Si 0.89 21.76 24.88 -169.99 -4.23 17.53 16 13 H -0.27 -6.30 5.80 56.52 0.33 -5.97 16 14 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.11 2.28 5.16 -67.93 -0.35 1.93 16 17 C -0.20 -4.35 6.69 -26.69 -0.18 -4.53 16 18 C -0.21 -4.30 10.36 -26.69 -0.28 -4.58 16 19 O -0.17 -3.48 10.65 5.71 0.06 -3.42 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 24 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 25 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 26 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.12 3.08 5.08 -51.93 -0.26 2.82 16 30 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 269.54 15.07 4.06 4.06 Total: -1.00 -30.74 269.54 -6.22 -36.96 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.52 Total: 3.85 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.03 Total: -19.38 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.44 Total: -39.61 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.06 Total: -3.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.53 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.74 -6.22 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603851539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.697 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds