Wall clock time and date at job start Sun Mar 29 2020 22:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47036 * 2 1 4 4 C 1.36860 * 119.99681 * 95.59351 * 3 2 1 5 5 H 1.08000 * 119.99479 * 219.38100 * 4 3 2 6 6 C 1.38786 * 120.00322 * 39.37703 * 4 3 2 7 7 N 1.31601 * 119.99666 * 20.78408 * 6 4 3 8 8 Si 1.86793 * 120.00162 * 200.78357 * 6 4 3 9 9 H 1.48500 * 109.47357 * 90.00216 * 8 6 4 10 10 H 1.48507 * 109.47513 * 210.00243 * 8 6 4 11 11 H 1.48500 * 109.47308 * 330.00157 * 8 6 4 12 12 C 1.39298 * 120.00296 * 275.58789 * 3 2 1 13 13 C 1.39142 * 120.05928 * 359.72747 * 12 3 2 14 14 C 1.38055 * 120.01791 * 179.71834 * 13 12 3 15 15 C 1.38266 * 120.14593 * 0.55906 * 14 13 12 16 16 C 1.38816 * 120.12157 * 359.71584 * 15 14 13 17 17 O 1.35899 * 120.01054 * 179.97438 * 16 15 14 18 18 C 1.42896 * 117.00115 * 0.02785 * 17 16 15 19 19 C 1.38563 * 119.97741 * 0.02562 * 16 15 14 20 20 H 1.09007 * 109.47275 * 59.99689 * 1 2 3 21 21 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47368 * 300.00330 * 1 2 3 23 23 H 1.08997 * 109.47396 * 120.00230 * 2 1 3 24 24 H 1.08998 * 109.47183 * 240.00345 * 2 1 3 25 25 H 0.96997 * 119.99497 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.98818 * 0.02562 * 13 12 3 27 27 H 1.08002 * 119.92975 * 180.25342 * 14 13 12 28 28 H 1.07993 * 119.93950 * 179.74883 * 15 14 13 29 29 H 1.09000 * 109.47040 * 59.99207 * 18 17 16 30 30 H 1.08991 * 109.47175 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.46807 * 299.99900 * 18 17 16 32 32 H 1.07996 * 120.07293 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3553 1.9879 1.1796 5 1 2.1069 3.0261 1.3431 6 6 3.0161 1.2688 2.1658 7 7 3.6751 0.1738 1.8517 8 14 2.9704 1.8553 3.9386 9 1 1.8026 1.2520 4.6297 10 1 4.2199 1.4451 4.6283 11 1 2.8522 3.3354 3.9675 12 6 2.1397 2.0771 -1.2006 13 6 1.8030 1.4597 -2.4012 14 6 1.9181 2.1521 -3.5900 15 6 2.3788 3.4557 -3.5925 16 6 2.7219 4.0756 -2.3987 17 8 3.1750 5.3568 -2.4039 18 6 3.2725 6.0054 -3.6734 19 6 2.6032 3.3872 -1.2021 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 4.1372 -0.3285 2.5409 26 1 1.4467 0.4401 -2.4025 27 1 1.6524 1.6728 -4.5206 28 1 2.4714 3.9928 -4.5248 29 1 2.2879 6.0409 -4.1398 30 1 3.6456 7.0201 -3.5353 31 1 3.9578 5.4498 -4.3135 32 1 2.8693 3.8681 -0.2724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604459712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:41 Heat of formation + Delta-G solvation = -4.480056 kcal Electronic energy + Delta-G solvation = -15009.107790 eV Core-core repulsion = 12549.278749 eV Total energy + Delta-G solvation = -2459.829041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.22040 -37.56334 -35.11535 -32.04975 -30.68396 -29.17655 -27.87209 -26.53719 -24.62508 -22.19777 -21.33996 -19.87339 -17.57605 -16.81027 -15.39103 -15.19710 -15.09935 -14.84949 -14.39023 -13.80563 -12.98436 -12.74043 -12.56739 -12.34261 -11.89577 -11.69885 -11.46056 -11.19159 -11.08758 -10.68720 -10.55623 -10.38698 -10.33879 -10.10639 -9.69293 -9.14830 -8.41870 -7.36660 -6.61835 -6.17633 -3.90215 2.53292 2.66092 3.18007 3.22437 3.25722 3.92074 4.12842 4.75628 5.00258 5.11339 5.45097 5.52759 5.72780 5.77685 5.99226 6.05542 6.21724 6.28788 6.33971 6.46201 6.60803 6.66906 6.88642 7.08296 7.25118 7.33888 7.42317 7.46185 7.58879 7.66209 8.15899 8.36760 8.71722 9.31316 9.71740 10.65474 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.009325 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.885629 B = 3002.061058 C = 3722.480204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.440 5.440 4 C -0.314 4.314 5 H 0.088 0.912 6 C 0.036 3.964 7 N -0.863 5.863 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.250 3.750 13 C -0.261 4.261 14 C -0.039 4.039 15 C -0.317 4.317 16 C 0.164 3.836 17 O -0.326 6.326 18 C 0.035 3.965 19 C -0.238 4.238 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.268 0.732 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 3.218 -6.090 7.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.127 5.127 4 C -0.443 4.443 5 H 0.105 0.895 6 C -0.169 4.169 7 N -0.498 5.498 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.134 3.866 13 C -0.284 4.284 14 C -0.058 4.058 15 C -0.340 4.340 16 C 0.118 3.882 17 O -0.240 6.240 18 C -0.060 4.060 19 C -0.263 4.263 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.776 3.002 -5.530 6.878 hybrid contribution 0.043 0.141 0.528 0.548 sum -2.733 3.143 -5.002 6.509 Atomic orbital electron populations 1.22209 0.98358 1.00137 1.01679 1.21364 0.91538 0.84836 1.03121 1.42453 1.57168 1.10851 1.02212 1.19359 1.35832 0.98019 0.91070 0.89485 1.25430 0.94035 0.96830 1.00601 1.70054 1.28476 1.17517 1.33790 0.86082 0.77670 0.79471 0.82458 1.20311 1.20950 1.19255 1.17836 0.91291 0.91082 0.86409 1.20397 1.15989 1.00407 0.91618 1.20314 0.95824 0.93284 0.96401 1.20445 1.19438 0.98346 0.95736 1.18650 0.93184 0.82263 0.94076 1.86003 1.81526 1.25412 1.31043 1.22839 1.00868 0.96944 0.85399 1.19617 1.15683 0.94921 0.96030 0.93379 0.93353 0.92714 0.88271 0.93250 0.92180 0.87374 0.87894 0.87821 0.93348 0.89450 0.93292 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.12 37.16 0.38 -2.79 16 2 C 0.12 2.62 5.29 -4.04 -0.02 2.59 16 3 N -0.44 -11.09 2.62 -113.15 -0.30 -11.38 16 4 C -0.31 -8.33 8.39 -15.10 -0.13 -8.45 16 5 H 0.09 2.31 6.94 -52.49 -0.36 1.95 16 6 C 0.04 0.95 4.89 -17.45 -0.09 0.86 16 7 N -0.86 -23.27 11.65 55.49 0.65 -22.63 16 8 Si 0.92 20.15 29.60 -169.99 -5.03 15.12 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.25 6.06 6.49 -83.86 -0.54 5.52 16 13 C -0.26 -5.62 8.80 -39.31 -0.35 -5.96 16 14 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 15 C -0.32 -6.19 9.04 -39.36 -0.36 -6.54 16 16 C 0.16 3.52 6.68 -39.25 -0.26 3.26 16 17 O -0.33 -6.36 10.49 -19.42 -0.20 -6.56 16 18 C 0.04 0.49 9.81 101.05 0.99 1.48 16 19 C -0.24 -5.73 9.20 -39.19 -0.36 -6.09 16 20 H 0.05 0.90 7.63 -51.93 -0.40 0.50 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.10 2.44 5.72 -51.93 -0.30 2.14 16 24 H 0.05 1.08 6.50 -51.93 -0.34 0.74 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.11 2.19 6.07 -52.49 -0.32 1.87 16 27 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.10 1.72 6.29 -52.49 -0.33 1.39 16 29 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 32 H 0.12 3.12 6.49 -52.49 -0.34 2.78 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -28.48 266.18 -6.01 -34.49 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.00 Total: 4.22 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.13 Total: -17.28 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.35 Total: -34.01 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.20 Total: -6.56 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.48 -6.01 -34.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604459712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.014 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds