Wall clock time and date at job start Sun Mar 29 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47036 * 2 1 4 4 C 1.36860 * 119.99681 * 95.59351 * 3 2 1 5 5 H 1.08000 * 119.99479 * 219.38100 * 4 3 2 6 6 C 1.38786 * 120.00322 * 39.37703 * 4 3 2 7 7 N 1.31601 * 119.99666 * 20.78408 * 6 4 3 8 8 Si 1.86793 * 120.00162 * 200.78357 * 6 4 3 9 9 H 1.48500 * 109.47357 * 90.00216 * 8 6 4 10 10 H 1.48507 * 109.47513 * 210.00243 * 8 6 4 11 11 H 1.48500 * 109.47308 * 330.00157 * 8 6 4 12 12 C 1.39298 * 120.00296 * 275.58789 * 3 2 1 13 13 C 1.39142 * 120.05928 * 359.72747 * 12 3 2 14 14 C 1.38055 * 120.01791 * 179.71834 * 13 12 3 15 15 C 1.38266 * 120.14593 * 0.55906 * 14 13 12 16 16 C 1.38816 * 120.12157 * 359.71584 * 15 14 13 17 17 O 1.35899 * 120.01054 * 179.97438 * 16 15 14 18 18 C 1.42896 * 117.00115 * 0.02785 * 17 16 15 19 19 C 1.38563 * 119.97741 * 0.02562 * 16 15 14 20 20 H 1.09007 * 109.47275 * 59.99689 * 1 2 3 21 21 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47368 * 300.00330 * 1 2 3 23 23 H 1.08997 * 109.47396 * 120.00230 * 2 1 3 24 24 H 1.08998 * 109.47183 * 240.00345 * 2 1 3 25 25 H 0.96997 * 119.99497 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.98818 * 0.02562 * 13 12 3 27 27 H 1.08002 * 119.92975 * 180.25342 * 14 13 12 28 28 H 1.07993 * 119.93950 * 179.74883 * 15 14 13 29 29 H 1.09000 * 109.47040 * 59.99207 * 18 17 16 30 30 H 1.08991 * 109.47175 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.46807 * 299.99900 * 18 17 16 32 32 H 1.07996 * 120.07293 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3553 1.9879 1.1796 5 1 2.1069 3.0261 1.3431 6 6 3.0161 1.2688 2.1658 7 7 3.6751 0.1738 1.8517 8 14 2.9704 1.8553 3.9386 9 1 1.8026 1.2520 4.6297 10 1 4.2199 1.4451 4.6283 11 1 2.8522 3.3354 3.9675 12 6 2.1397 2.0771 -1.2006 13 6 1.8030 1.4597 -2.4012 14 6 1.9181 2.1521 -3.5900 15 6 2.3788 3.4557 -3.5925 16 6 2.7219 4.0756 -2.3987 17 8 3.1750 5.3568 -2.4039 18 6 3.2725 6.0054 -3.6734 19 6 2.6032 3.3872 -1.2021 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 4.1372 -0.3285 2.5409 26 1 1.4467 0.4401 -2.4025 27 1 1.6524 1.6728 -4.5206 28 1 2.4714 3.9928 -4.5248 29 1 2.2879 6.0409 -4.1398 30 1 3.6456 7.0201 -3.5353 31 1 3.9578 5.4498 -4.3135 32 1 2.8693 3.8681 -0.2724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604459712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:40 Heat of formation + Delta-G solvation = -20.731393 kcal Electronic energy + Delta-G solvation = -15009.812501 eV Core-core repulsion = 12549.278749 eV Total energy + Delta-G solvation = -2460.533752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82100 -39.20896 -36.79563 -33.94609 -32.35552 -30.74199 -29.61507 -27.82446 -26.47599 -23.86667 -23.02636 -21.53856 -19.27985 -18.59236 -17.14345 -16.79003 -16.55870 -16.44430 -16.04158 -15.50648 -14.69148 -14.31176 -14.24584 -13.97026 -13.58515 -13.20493 -12.94249 -12.77895 -12.74452 -12.48094 -12.17725 -12.02248 -11.95211 -11.71567 -11.37776 -10.96564 -10.23343 -9.02279 -8.52100 -8.02714 -5.89035 0.85429 0.98690 1.40507 1.43497 1.51759 2.27504 2.55142 2.88596 3.29240 3.32350 4.20566 4.31525 4.46724 4.49090 4.49406 4.63080 4.64009 4.76636 4.77072 4.87421 4.96825 5.01747 5.22054 5.37295 5.42494 5.53814 5.68218 5.77939 5.91758 6.00703 6.26760 6.79762 6.82103 7.45921 7.82160 8.71602 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.009325 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.885629 B = 3002.061058 C = 3722.480204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 N -0.464 5.464 4 C -0.330 4.330 5 H 0.071 0.929 6 C -0.005 4.005 7 N -0.895 5.895 8 Si 0.979 3.021 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.228 3.772 13 C -0.270 4.270 14 C -0.031 4.031 15 C -0.306 4.306 16 C 0.162 3.838 17 O -0.348 6.348 18 C 0.023 3.977 19 C -0.275 4.275 20 H 0.051 0.949 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.270 0.730 26 H 0.119 0.881 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 3.685 -8.081 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 N -0.154 5.154 4 C -0.459 4.459 5 H 0.089 0.911 6 C -0.207 4.207 7 N -0.532 5.532 8 Si 0.803 3.197 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.114 3.886 13 C -0.294 4.294 14 C -0.050 4.050 15 C -0.327 4.327 16 C 0.116 3.884 17 O -0.262 6.262 18 C -0.071 4.071 19 C -0.300 4.300 20 H 0.071 0.929 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.137 0.863 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.398 3.493 -7.559 8.994 hybrid contribution 0.269 0.142 0.908 0.957 sum -3.130 3.635 -6.651 8.201 Atomic orbital electron populations 1.22076 0.95750 1.01987 1.01185 1.21349 0.93617 0.83712 1.01979 1.42590 1.58988 1.11674 1.02165 1.19398 1.36299 0.97766 0.92416 0.91121 1.26169 0.93507 0.97026 1.04014 1.70140 1.29550 1.18681 1.34816 0.85134 0.77840 0.78822 0.77856 1.19333 1.20622 1.19295 1.18220 0.91814 0.91276 0.87281 1.20637 1.16119 1.01168 0.91451 1.20820 0.93809 0.93120 0.97206 1.20895 1.17136 0.98461 0.96254 1.18757 0.92556 0.83171 0.93879 1.85983 1.81057 1.24537 1.34620 1.23259 1.02328 0.98057 0.83447 1.19644 1.18190 0.95796 0.96325 0.92943 0.90235 0.94003 0.90706 0.92946 0.92100 0.86267 0.83540 0.84052 0.91775 0.86555 0.92031 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 10.12 71.98 0.73 -5.01 16 2 C 0.12 5.40 5.29 86.38 0.46 5.86 16 3 N -0.46 -24.22 2.62 -511.89 -1.34 -25.56 16 4 C -0.33 -18.32 8.39 84.04 0.71 -17.62 16 5 H 0.07 4.01 6.94 -2.91 -0.02 3.99 16 6 C -0.01 -0.27 4.89 84.86 0.42 0.14 16 7 N -0.90 -49.86 11.65 21.65 0.25 -49.61 16 8 Si 0.98 42.58 29.60 68.60 2.03 44.61 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 C 0.23 11.27 6.49 38.35 0.25 11.52 16 13 C -0.27 -11.29 8.80 22.44 0.20 -11.09 16 14 C -0.03 -1.08 10.03 22.23 0.22 -0.86 16 15 C -0.31 -10.86 9.04 22.41 0.20 -10.66 16 16 C 0.16 6.83 6.68 22.49 0.15 6.98 16 17 O -0.35 -13.12 10.49 -92.41 -0.97 -14.09 16 18 C 0.02 0.56 9.81 113.37 1.11 1.68 16 19 C -0.27 -13.65 9.20 22.52 0.21 -13.45 16 20 H 0.05 1.91 7.63 -2.38 -0.02 1.89 16 21 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.07 3.81 5.72 -2.39 -0.01 3.79 16 24 H 0.05 2.31 6.50 -2.39 -0.02 2.29 16 25 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.12 4.63 6.07 -2.91 -0.02 4.61 16 27 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.14 3.94 6.29 -2.91 -0.02 3.92 16 29 H 0.06 1.36 7.66 -2.39 -0.02 1.34 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.35 7.66 -2.39 -0.02 1.33 16 32 H 0.09 5.13 6.49 -2.91 -0.02 5.11 16 Total: -1.00 -63.72 266.18 5.73 -57.99 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.11 Total: 19.17 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.65 Total: -32.50 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -1.09 Total: -75.17 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.97 Total: -14.09 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.72 5.73 -57.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604459712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.260 kcal (2) G-P(sol) polarization free energy of solvation -63.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds