Wall clock time and date at job start Sun Mar 29 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46992 * 2 1 4 4 C 1.36934 * 120.00242 * 272.44446 * 3 2 1 5 5 H 1.08001 * 120.00344 * 177.34776 * 4 3 2 6 6 C 1.38816 * 119.99761 * 357.34275 * 4 3 2 7 7 N 1.31618 * 120.00041 * 29.08544 * 6 4 3 8 8 Si 1.86803 * 119.99767 * 209.08299 * 6 4 3 9 9 H 1.48506 * 109.46983 * 84.99775 * 8 6 4 10 10 H 1.48499 * 109.47095 * 204.98985 * 8 6 4 11 11 H 1.48502 * 109.47296 * 324.99674 * 8 6 4 12 12 C 1.46504 * 119.99971 * 92.44366 * 3 2 1 13 13 C 1.50697 * 109.47027 * 270.00173 * 12 3 2 14 14 C 1.38597 * 120.80302 * 89.99980 * 13 12 3 15 15 N 1.32337 * 119.10332 * 179.72130 * 14 13 12 16 16 C 1.31793 * 120.81864 * 0.27788 * 15 14 13 17 17 C 1.50700 * 119.11958 * 180.02562 * 16 15 14 18 18 N 1.31796 * 121.75713 * 0.02562 * 16 15 14 19 19 C 1.32335 * 120.81694 * 359.97438 * 18 16 15 20 20 H 1.09000 * 109.47172 * 60.00025 * 1 2 3 21 21 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47342 * 299.99792 * 1 2 3 23 23 H 1.09003 * 109.47342 * 240.00208 * 2 1 3 24 24 H 1.09000 * 109.47172 * 119.99975 * 2 1 3 25 25 H 0.96996 * 119.99565 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47499 * 149.99535 * 12 3 2 27 27 H 1.09002 * 109.46688 * 29.99985 * 12 3 2 28 28 H 1.08002 * 120.44491 * 359.97438 * 14 13 12 29 29 H 1.08996 * 109.47228 * 90.00085 * 17 16 15 30 30 H 1.09000 * 109.46786 * 209.99837 * 17 16 15 31 31 H 1.08998 * 109.47142 * 329.99247 * 17 16 15 32 32 H 1.07997 * 120.44554 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1988 2.0436 -1.1848 5 1 2.5177 3.0755 -1.1835 6 6 1.9720 1.3888 -2.3876 7 7 1.0896 0.4143 -2.4502 8 14 2.9192 1.8909 -3.9174 9 1 4.2262 1.1863 -3.9438 10 1 2.1365 1.5273 -5.1258 11 1 3.1481 3.3581 -3.8987 12 6 2.3134 2.0538 1.2676 13 6 1.0763 2.7575 1.7628 14 6 0.1740 2.1084 2.5907 15 7 -0.8986 2.7603 3.0103 16 6 -1.1159 4.0081 2.6460 17 6 -2.3495 4.7141 3.1469 18 7 -0.2832 4.6549 1.8553 19 6 0.8103 4.0675 1.3964 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.9309 -0.0430 -3.2907 26 1 3.1097 2.7824 1.1156 27 1 2.6316 1.3164 2.0046 28 1 0.3460 1.0859 2.8927 29 1 -2.1244 5.2149 4.0884 30 1 -2.6703 5.4512 2.4108 31 1 -3.1460 3.9867 3.3035 32 1 1.4883 4.6030 0.7485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604541038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:01 Heat of formation + Delta-G solvation = 72.813801 kcal Electronic energy + Delta-G solvation = -15171.807474 eV Core-core repulsion = 12747.622898 eV Total energy + Delta-G solvation = -2424.184577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47707 -36.35856 -33.22684 -33.13670 -31.15149 -29.77707 -28.21587 -25.20090 -24.04601 -23.19226 -21.52036 -20.28535 -17.27064 -16.55754 -16.21130 -15.20772 -14.69075 -14.08349 -13.70539 -13.41768 -13.08302 -12.80987 -12.35206 -12.16248 -11.96474 -11.93515 -11.50022 -10.97112 -10.85793 -10.56937 -10.34511 -10.22060 -10.02045 -9.88804 -9.49894 -8.67688 -8.65593 -8.28425 -7.09639 -5.90625 -3.13480 1.47595 1.65563 3.34880 3.43263 3.43809 4.22458 4.43833 4.46539 4.66219 5.18552 5.26173 5.44704 5.53419 5.57413 5.72636 5.74816 5.80617 6.18031 6.20794 6.43632 6.48405 6.64653 6.85668 6.98547 6.99755 7.09146 7.53473 7.59399 7.71732 8.05469 8.21863 8.62035 9.11240 9.73319 10.16685 11.12288 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.008547 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.340725 B = 3275.140203 C = 3519.434193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 N -0.586 5.586 4 C -0.257 4.257 5 H 0.078 0.922 6 C 0.004 3.996 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.281 1.281 12 C 0.190 3.810 13 C -0.188 4.188 14 C 0.149 3.851 15 N -0.525 5.525 16 C 0.282 3.718 17 C -0.077 4.077 18 N -0.523 5.523 19 C 0.153 3.847 20 H 0.087 0.913 21 H 0.020 0.980 22 H 0.012 0.988 23 H 0.092 0.908 24 H 0.008 0.992 25 H 0.254 0.746 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 3.319 8.415 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.096 0.904 6 C -0.194 4.194 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.220 1.220 11 H -0.206 1.206 12 C 0.061 3.939 13 C -0.196 4.196 14 C -0.018 4.018 15 N -0.239 5.239 16 C 0.014 3.986 17 C -0.135 4.135 18 N -0.237 5.237 19 C -0.013 4.013 20 H 0.106 0.894 21 H 0.039 0.961 22 H 0.031 0.969 23 H 0.109 0.891 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.174 0.826 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.729 3.650 8.551 9.457 hybrid contribution 0.949 -0.275 -1.311 1.641 sum -0.780 3.375 7.240 8.026 Atomic orbital electron populations 1.22371 0.99203 0.98261 1.01041 1.21093 0.92560 0.84153 0.98562 1.44603 1.75225 1.10494 1.00220 1.19286 1.39360 0.96685 0.83206 0.90372 1.24756 0.98473 0.98633 0.97573 1.70254 1.30446 1.26872 1.25425 0.86398 0.80495 0.78083 0.82577 1.21384 1.21986 1.20622 1.19771 0.90812 0.94899 0.88370 1.23015 1.03685 0.96127 0.96780 1.22898 0.88319 0.99016 0.91540 1.68113 1.20968 1.09629 1.25188 1.22943 0.95751 0.87976 0.91902 1.20412 0.92235 0.99671 1.01190 1.68136 1.04460 1.39565 1.11535 1.22969 0.92585 0.92000 0.93758 0.89449 0.96136 0.96899 0.89058 0.97412 0.93579 0.91940 0.92697 0.82586 0.90544 0.90268 0.90303 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.68 37.16 0.36 -3.10 16 2 C 0.16 3.71 5.71 -4.04 -0.02 3.69 16 3 N -0.59 -13.58 2.52 -174.61 -0.44 -14.02 16 4 C -0.26 -6.58 9.69 -15.06 -0.15 -6.73 16 5 H 0.08 1.95 7.98 -52.49 -0.42 1.53 16 6 C 0.00 0.10 4.98 -17.43 -0.09 0.01 16 7 N -0.89 -24.06 8.33 55.49 0.46 -23.60 16 8 Si 0.90 20.89 29.64 -169.99 -5.04 15.85 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.19 3.58 5.88 -5.19 -0.03 3.55 16 13 C -0.19 -3.51 5.44 -104.36 -0.57 -4.08 16 14 C 0.15 2.72 9.00 -17.20 -0.15 2.56 16 15 N -0.52 -9.74 10.33 -10.72 -0.11 -9.85 16 16 C 0.28 5.05 7.64 -157.19 -1.20 3.84 16 17 C -0.08 -1.01 10.32 36.01 0.37 -0.64 16 18 N -0.52 -9.89 10.33 -10.72 -0.11 -10.00 16 19 C 0.15 2.89 11.01 -17.20 -0.19 2.70 16 20 H 0.09 2.35 6.29 -51.93 -0.33 2.02 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.01 0.27 5.67 -51.93 -0.29 -0.02 16 23 H 0.09 2.36 5.81 -51.93 -0.30 2.06 16 24 H 0.01 0.16 7.86 -51.93 -0.41 -0.25 16 25 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 27 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 28 H 0.16 2.56 7.87 -52.49 -0.41 2.15 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.16 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 268.09 15.07 4.04 4.04 Total: -1.00 -28.65 268.09 -7.10 -35.75 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.23 Total: 0.02 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.67 Total: 1.81 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.20 Total: -57.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.65 -7.10 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.567 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds