Wall clock time and date at job start Sun Mar 29 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46992 * 2 1 4 4 C 1.36934 * 120.00242 * 272.44446 * 3 2 1 5 5 H 1.08001 * 120.00344 * 177.34776 * 4 3 2 6 6 C 1.38816 * 119.99761 * 357.34275 * 4 3 2 7 7 N 1.31618 * 120.00041 * 29.08544 * 6 4 3 8 8 Si 1.86803 * 119.99767 * 209.08299 * 6 4 3 9 9 H 1.48506 * 109.46983 * 84.99775 * 8 6 4 10 10 H 1.48499 * 109.47095 * 204.98985 * 8 6 4 11 11 H 1.48502 * 109.47296 * 324.99674 * 8 6 4 12 12 C 1.46504 * 119.99971 * 92.44366 * 3 2 1 13 13 C 1.50697 * 109.47027 * 270.00173 * 12 3 2 14 14 C 1.38597 * 120.80302 * 89.99980 * 13 12 3 15 15 N 1.32337 * 119.10332 * 179.72130 * 14 13 12 16 16 C 1.31793 * 120.81864 * 0.27788 * 15 14 13 17 17 C 1.50700 * 119.11958 * 180.02562 * 16 15 14 18 18 N 1.31796 * 121.75713 * 0.02562 * 16 15 14 19 19 C 1.32335 * 120.81694 * 359.97438 * 18 16 15 20 20 H 1.09000 * 109.47172 * 60.00025 * 1 2 3 21 21 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47342 * 299.99792 * 1 2 3 23 23 H 1.09003 * 109.47342 * 240.00208 * 2 1 3 24 24 H 1.09000 * 109.47172 * 119.99975 * 2 1 3 25 25 H 0.96996 * 119.99565 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47499 * 149.99535 * 12 3 2 27 27 H 1.09002 * 109.46688 * 29.99985 * 12 3 2 28 28 H 1.08002 * 120.44491 * 359.97438 * 14 13 12 29 29 H 1.08996 * 109.47228 * 90.00085 * 17 16 15 30 30 H 1.09000 * 109.46786 * 209.99837 * 17 16 15 31 31 H 1.08998 * 109.47142 * 329.99247 * 17 16 15 32 32 H 1.07997 * 120.44554 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1988 2.0436 -1.1848 5 1 2.5177 3.0755 -1.1835 6 6 1.9720 1.3888 -2.3876 7 7 1.0896 0.4143 -2.4502 8 14 2.9192 1.8909 -3.9174 9 1 4.2262 1.1863 -3.9438 10 1 2.1365 1.5273 -5.1258 11 1 3.1481 3.3581 -3.8987 12 6 2.3134 2.0538 1.2676 13 6 1.0763 2.7575 1.7628 14 6 0.1740 2.1084 2.5907 15 7 -0.8986 2.7603 3.0103 16 6 -1.1159 4.0081 2.6460 17 6 -2.3495 4.7141 3.1469 18 7 -0.2832 4.6549 1.8553 19 6 0.8103 4.0675 1.3964 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.9309 -0.0430 -3.2907 26 1 3.1097 2.7824 1.1156 27 1 2.6316 1.3164 2.0046 28 1 0.3460 1.0859 2.8927 29 1 -2.1244 5.2149 4.0884 30 1 -2.6703 5.4512 2.4108 31 1 -3.1460 3.9867 3.3035 32 1 1.4883 4.6030 0.7485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604541038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:01 Heat of formation + Delta-G solvation = 56.396505 kcal Electronic energy + Delta-G solvation = -15172.519382 eV Core-core repulsion = 12747.622898 eV Total energy + Delta-G solvation = -2424.896484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.89458 -38.07546 -34.75979 -34.56843 -32.88348 -31.44042 -29.72107 -26.83843 -25.48122 -24.88941 -23.06494 -22.00237 -18.86173 -18.25239 -17.57785 -17.02911 -16.09382 -15.67159 -15.49102 -15.12923 -14.49970 -14.15506 -13.84920 -13.69775 -13.41405 -13.26371 -13.14404 -12.73218 -12.63330 -12.38254 -11.94631 -11.81987 -11.71992 -11.62337 -11.35053 -10.32365 -10.11004 -9.98246 -8.93812 -7.84833 -5.08399 0.06844 0.21194 1.48982 1.53797 1.58396 2.53342 2.85316 3.16967 3.24936 3.30630 3.78260 3.86339 4.08245 4.13643 4.49964 4.63604 4.69994 4.74475 4.84403 4.96162 5.04516 5.09087 5.18006 5.23252 5.26851 5.61224 5.64437 5.83157 6.10210 6.14217 6.32545 7.19295 7.20823 7.90687 8.29398 9.16747 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.008547 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.340725 B = 3275.140203 C = 3519.434193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 N -0.601 5.601 4 C -0.258 4.258 5 H 0.080 0.920 6 C -0.046 4.046 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.288 1.288 10 H -0.305 1.305 11 H -0.275 1.275 12 C 0.191 3.809 13 C -0.196 4.196 14 C 0.148 3.852 15 N -0.536 5.536 16 C 0.276 3.724 17 C -0.075 4.075 18 N -0.538 5.538 19 C 0.144 3.856 20 H 0.047 0.953 21 H 0.030 0.970 22 H 0.021 0.979 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.245 0.755 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.175 0.825 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 3.905 9.853 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 N -0.321 5.321 4 C -0.387 4.387 5 H 0.098 0.902 6 C -0.241 4.241 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.200 1.200 12 C 0.064 3.936 13 C -0.203 4.203 14 C -0.018 4.018 15 N -0.251 5.251 16 C 0.008 3.992 17 C -0.133 4.133 18 N -0.253 5.253 19 C -0.022 4.022 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.192 0.808 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.685 4.269 10.026 11.027 hybrid contribution 0.904 -0.380 -1.605 1.881 sum -0.781 3.889 8.421 9.309 Atomic orbital electron populations 1.22166 0.99432 0.98380 0.99350 1.20932 0.92275 0.84433 0.98391 1.44651 1.75639 1.10752 1.01066 1.19522 1.38236 0.96700 0.84278 0.90201 1.25327 0.99496 0.99500 0.99801 1.70411 1.31725 1.28308 1.25194 0.85558 0.79024 0.77861 0.79754 1.21513 1.23206 1.20008 1.19916 0.90935 0.95617 0.87178 1.22930 1.03352 0.96324 0.97706 1.23252 0.87937 0.99723 0.90935 1.68230 1.21193 1.10035 1.25644 1.23854 0.96483 0.88015 0.90826 1.20575 0.90534 0.99915 1.02306 1.68229 1.04852 1.39943 1.12284 1.23241 0.92851 0.92450 0.93614 0.93393 0.95114 0.96029 0.92132 0.94534 0.94532 0.90922 0.90169 0.80816 0.88230 0.89435 0.89218 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 9.68 71.98 0.70 -5.40 16 2 C 0.16 7.43 5.71 86.38 0.49 7.92 16 3 N -0.60 -27.09 2.52 -706.34 -1.78 -28.87 16 4 C -0.26 -13.07 9.69 84.03 0.81 -12.26 16 5 H 0.08 3.92 7.98 -2.91 -0.02 3.90 16 6 C -0.05 -2.43 4.98 84.86 0.42 -2.00 16 7 N -0.91 -50.36 8.33 21.65 0.18 -50.18 16 8 Si 0.95 43.40 29.64 68.60 2.03 45.43 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.19 6.75 5.88 85.63 0.50 7.26 16 13 C -0.20 -6.94 5.44 -19.69 -0.11 -7.04 16 14 C 0.15 5.05 9.00 84.70 0.76 5.81 16 15 N -0.54 -18.72 10.33 -187.84 -1.94 -20.66 16 16 C 0.28 9.27 7.64 138.75 1.06 10.33 16 17 C -0.08 -1.78 10.32 71.24 0.74 -1.05 16 18 N -0.54 -19.49 10.33 -187.84 -1.94 -21.43 16 19 C 0.14 5.23 11.01 84.70 0.93 6.16 16 20 H 0.05 2.58 6.29 -2.39 -0.02 2.57 16 21 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.02 0.90 5.67 -2.39 -0.01 0.89 16 23 H 0.06 3.14 5.81 -2.39 -0.01 3.12 16 24 H 0.04 1.42 7.86 -2.39 -0.02 1.40 16 25 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 26 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 27 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 28 H 0.17 5.19 7.87 -2.91 -0.02 5.16 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.17 5.62 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -60.34 268.09 3.97 -56.37 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.10 Total: 9.62 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.31 Total: 9.72 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -5.48 Total: -121.14 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -60.34 3.97 -56.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.764 kcal (2) G-P(sol) polarization free energy of solvation -60.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds