Wall clock time and date at job start Sun Mar 29 2020 22:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34951 * 126.03517 * 2 1 4 4 C 1.35319 * 107.74398 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.03623 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47369 * 90.00003 * 5 4 3 7 7 C 1.36936 * 120.00020 * 89.99548 * 6 5 4 8 8 H 1.07995 * 120.00369 * 214.83528 * 7 6 5 9 9 C 1.38820 * 119.99551 * 34.83909 * 7 6 5 10 10 N 1.31612 * 120.00209 * 21.97900 * 9 7 6 11 11 Si 1.86803 * 119.99525 * 201.97729 * 9 7 6 12 12 H 1.48495 * 109.47456 * 269.99970 * 11 9 7 13 13 H 1.48499 * 109.46949 * 30.00309 * 11 9 7 14 14 H 1.48499 * 109.46774 * 149.99734 * 11 9 7 15 15 C 1.46494 * 120.00127 * 269.99957 * 6 5 4 16 16 C 1.53004 * 117.50070 * 192.43042 * 15 6 5 17 17 C 1.52995 * 117.50069 * 123.76930 * 15 6 5 18 18 C 1.39867 * 107.92026 * 0.26183 * 4 3 2 19 19 N 1.30837 * 108.19981 * 359.55871 * 18 4 3 20 20 H 1.08998 * 109.46878 * 89.99971 * 1 2 3 21 21 H 1.08994 * 109.46897 * 209.99852 * 1 2 3 22 22 H 1.08994 * 109.47107 * 330.00126 * 1 2 3 23 23 H 1.07997 * 126.12717 * 0.04287 * 3 2 1 24 24 H 1.08998 * 109.47352 * 329.99685 * 5 4 3 25 25 H 1.08999 * 109.47066 * 210.00130 * 5 4 3 26 26 H 0.96998 * 120.00138 * 180.51327 * 10 9 7 27 27 H 1.09003 * 115.55265 * 338.09995 * 15 6 5 28 28 H 1.08997 * 117.49630 * 359.97438 * 16 15 6 29 29 H 1.09000 * 117.49652 * 145.02158 * 16 15 6 30 30 H 1.09003 * 117.50087 * 214.97992 * 17 15 6 31 31 H 1.09002 * 117.49889 * 359.97438 * 17 15 6 32 32 H 1.07995 * 125.89523 * 179.73274 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0002 6 7 5.1650 1.8292 1.3810 7 6 6.0421 0.9985 2.0258 8 1 5.9352 0.8177 3.0851 9 6 7.0687 0.3888 1.3177 10 7 7.4792 0.9045 0.1786 11 14 7.8674 -1.1638 1.9818 12 1 9.0168 -0.7977 2.8477 13 1 6.8741 -1.9308 2.7756 14 1 8.3461 -1.9972 0.8497 15 6 4.6237 3.0018 2.0726 16 6 5.2839 3.4120 3.3905 17 6 3.8958 2.7669 3.3976 18 6 3.5347 -0.7320 -0.0070 19 7 2.2892 -1.1327 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.9281 2.1193 0.0007 24 1 4.5441 2.4806 -0.5134 25 1 5.5820 1.0346 -0.5146 26 1 8.1914 0.4743 -0.3199 27 1 4.2507 3.7974 1.4276 28 1 6.1207 2.8092 3.7432 29 1 5.3448 4.4774 3.6126 30 1 3.0440 3.4082 3.6245 31 1 3.8192 1.7399 3.7546 32 1 4.4054 -1.3708 -0.0131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604549185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:49 Heat of formation + Delta-G solvation = 131.744538 kcal Electronic energy + Delta-G solvation = -15167.009037 eV Core-core repulsion = 12745.379889 eV Total energy + Delta-G solvation = -2421.629148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39094 -36.91701 -33.74398 -32.55126 -30.96136 -29.12183 -26.79557 -24.90344 -23.06884 -21.32721 -20.37319 -19.82680 -19.43809 -16.57394 -15.88337 -15.28013 -14.88570 -14.29920 -13.85813 -13.77958 -13.01364 -12.82955 -12.28952 -12.16181 -11.94513 -11.67809 -11.06981 -10.79602 -10.73661 -10.57597 -10.16114 -10.04644 -9.83571 -9.48123 -9.27219 -8.71894 -8.37453 -7.58138 -6.49824 -5.76287 -3.31127 2.55403 3.12109 3.37315 3.45784 3.50429 3.64877 4.50073 4.93822 4.99667 5.33047 5.40363 5.44617 5.46202 5.53855 5.80638 5.93837 6.13395 6.26771 6.37404 6.41900 6.51212 6.65006 6.85074 7.01179 7.10602 7.20269 7.44220 7.61989 7.79353 7.85109 8.40031 8.54282 9.20543 9.84180 10.39366 11.22176 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.011487 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.140277 B = 2436.907402 C = 3167.848542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.392 5.392 3 C 0.034 3.966 4 C -0.209 4.209 5 C 0.208 3.792 6 N -0.543 5.543 7 C -0.249 4.249 8 H 0.060 0.940 9 C 0.012 3.988 10 N -0.886 5.886 11 Si 0.892 3.108 12 H -0.286 1.286 13 H -0.278 1.278 14 H -0.287 1.287 15 C 0.132 3.868 16 C -0.198 4.198 17 C -0.228 4.228 18 C 0.068 3.932 19 N -0.319 5.319 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.160 0.840 24 H 0.031 0.969 25 H 0.110 0.890 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 1.871 -0.758 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.177 5.177 3 C -0.110 4.110 4 C -0.222 4.222 5 C 0.081 3.919 6 N -0.258 5.258 7 C -0.379 4.379 8 H 0.078 0.922 9 C -0.187 4.187 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.213 1.213 13 H -0.203 1.203 14 H -0.213 1.213 15 C 0.022 3.978 16 C -0.237 4.237 17 C -0.269 4.269 18 C -0.119 4.119 19 N -0.141 5.141 20 H 0.082 0.918 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.178 0.822 24 H 0.049 0.951 25 H 0.127 0.873 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.847 0.815 -0.912 10.916 hybrid contribution 0.821 -0.102 0.573 1.006 sum -10.027 0.713 -0.340 10.058 Atomic orbital electron populations 1.21613 0.75807 1.03544 1.02237 1.48303 1.05687 1.04220 1.59469 1.22208 0.91288 0.92453 1.05084 1.21454 0.95956 0.94792 1.10011 1.19453 0.91905 0.94412 0.86116 1.43426 1.47781 1.23267 1.11354 1.18898 1.04680 1.20318 0.93999 0.92248 1.25034 0.95886 0.99977 0.97834 1.69962 1.28127 1.38156 1.16573 0.86473 0.79327 0.83855 0.78264 1.21310 1.20300 1.21301 1.21070 0.98920 0.91277 0.86560 1.23081 0.96378 0.98822 1.05368 1.23349 0.94200 1.00644 1.08749 1.23741 0.94187 0.95544 0.98387 1.77192 1.02172 1.08300 1.26457 0.91785 0.90171 0.90317 0.82240 0.95053 0.87307 0.93461 0.89637 0.88390 0.90882 0.91247 0.89959 0.80791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.85 0.69 1.96 16 2 N -0.39 -6.80 4.01 -68.17 -0.27 -7.07 16 3 C 0.03 0.62 11.40 -17.22 -0.20 0.42 16 4 C -0.21 -4.38 5.68 -105.05 -0.60 -4.98 16 5 C 0.21 4.77 5.82 -5.20 -0.03 4.74 16 6 N -0.54 -13.23 2.78 -167.03 -0.47 -13.69 16 7 C -0.25 -6.65 8.20 -15.06 -0.12 -6.77 16 8 H 0.06 1.63 7.15 -52.49 -0.38 1.25 16 9 C 0.01 0.34 4.97 -17.43 -0.09 0.25 16 10 N -0.89 -24.57 11.31 55.49 0.63 -23.94 16 11 Si 0.89 21.31 29.61 -169.99 -5.03 16.28 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.13 2.80 6.61 -67.93 -0.45 2.35 16 16 C -0.20 -3.99 9.79 -26.69 -0.26 -4.25 16 17 C -0.23 -4.47 10.13 -26.70 -0.27 -4.74 16 18 C 0.07 1.44 11.96 -17.37 -0.21 1.23 16 19 N -0.32 -6.49 12.57 30.62 0.39 -6.10 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.16 2.37 8.06 -52.49 -0.42 1.94 16 24 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 25 H 0.11 2.81 5.33 -51.93 -0.28 2.53 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 28 H 0.10 2.19 6.82 -51.93 -0.35 1.83 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.18 3.67 8.06 -52.49 -0.42 3.25 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -30.08 276.37 -6.49 -36.58 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.36 Total: 3.57 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.54 Total: -9.78 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.27 Total: -50.81 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.08 -6.49 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604549185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.321 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds