Wall clock time and date at job start Sun Mar 29 2020 22:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34951 * 126.03517 * 2 1 4 4 C 1.35319 * 107.74398 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.03623 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47369 * 90.00003 * 5 4 3 7 7 C 1.36936 * 120.00020 * 89.99548 * 6 5 4 8 8 H 1.07995 * 120.00369 * 214.83528 * 7 6 5 9 9 C 1.38820 * 119.99551 * 34.83909 * 7 6 5 10 10 N 1.31612 * 120.00209 * 21.97900 * 9 7 6 11 11 Si 1.86803 * 119.99525 * 201.97729 * 9 7 6 12 12 H 1.48495 * 109.47456 * 269.99970 * 11 9 7 13 13 H 1.48499 * 109.46949 * 30.00309 * 11 9 7 14 14 H 1.48499 * 109.46774 * 149.99734 * 11 9 7 15 15 C 1.46494 * 120.00127 * 269.99957 * 6 5 4 16 16 C 1.53004 * 117.50070 * 192.43042 * 15 6 5 17 17 C 1.52995 * 117.50069 * 123.76930 * 15 6 5 18 18 C 1.39867 * 107.92026 * 0.26183 * 4 3 2 19 19 N 1.30837 * 108.19981 * 359.55871 * 18 4 3 20 20 H 1.08998 * 109.46878 * 89.99971 * 1 2 3 21 21 H 1.08994 * 109.46897 * 209.99852 * 1 2 3 22 22 H 1.08994 * 109.47107 * 330.00126 * 1 2 3 23 23 H 1.07997 * 126.12717 * 0.04287 * 3 2 1 24 24 H 1.08998 * 109.47352 * 329.99685 * 5 4 3 25 25 H 1.08999 * 109.47066 * 210.00130 * 5 4 3 26 26 H 0.96998 * 120.00138 * 180.51327 * 10 9 7 27 27 H 1.09003 * 115.55265 * 338.09995 * 15 6 5 28 28 H 1.08997 * 117.49630 * 359.97438 * 16 15 6 29 29 H 1.09000 * 117.49652 * 145.02158 * 16 15 6 30 30 H 1.09003 * 117.50087 * 214.97992 * 17 15 6 31 31 H 1.09002 * 117.49889 * 359.97438 * 17 15 6 32 32 H 1.07995 * 125.89523 * 179.73274 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0002 6 7 5.1650 1.8292 1.3810 7 6 6.0421 0.9985 2.0258 8 1 5.9352 0.8177 3.0851 9 6 7.0687 0.3888 1.3177 10 7 7.4792 0.9045 0.1786 11 14 7.8674 -1.1638 1.9818 12 1 9.0168 -0.7977 2.8477 13 1 6.8741 -1.9308 2.7756 14 1 8.3461 -1.9972 0.8497 15 6 4.6237 3.0018 2.0726 16 6 5.2839 3.4120 3.3905 17 6 3.8958 2.7669 3.3976 18 6 3.5347 -0.7320 -0.0070 19 7 2.2892 -1.1327 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.9281 2.1193 0.0007 24 1 4.5441 2.4806 -0.5134 25 1 5.5820 1.0346 -0.5146 26 1 8.1914 0.4743 -0.3199 27 1 4.2507 3.7974 1.4276 28 1 6.1207 2.8092 3.7432 29 1 5.3448 4.4774 3.6126 30 1 3.0440 3.4082 3.6245 31 1 3.8192 1.7399 3.7546 32 1 4.4054 -1.3708 -0.0131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604549185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:49 Heat of formation + Delta-G solvation = 113.979337 kcal Electronic energy + Delta-G solvation = -15167.779394 eV Core-core repulsion = 12745.379889 eV Total energy + Delta-G solvation = -2422.399505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86038 -38.62650 -35.45627 -34.00627 -32.74115 -30.77358 -28.18017 -26.66309 -24.75431 -22.91100 -21.88904 -21.46839 -21.01466 -18.32941 -17.50436 -16.97803 -16.29103 -16.01203 -15.64809 -15.18200 -14.68223 -14.18118 -13.86254 -13.56047 -13.26190 -13.20499 -12.96965 -12.64492 -12.58344 -12.16793 -12.03557 -11.84803 -11.56795 -11.15936 -10.89099 -10.33927 -10.14691 -9.08327 -8.42905 -7.75222 -5.34297 1.10896 1.43250 1.48084 1.56362 1.88401 2.04319 2.53650 3.20858 3.53215 3.73759 3.85431 4.17576 4.36188 4.45539 4.51150 4.54093 4.58469 4.71894 4.74853 4.93737 4.97876 5.10367 5.23790 5.37883 5.46861 5.58361 5.72326 5.84668 5.90780 6.37311 6.53805 6.90853 7.22772 7.95248 8.42988 9.17527 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.011487 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.140277 B = 2436.907402 C = 3167.848542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.383 5.383 3 C 0.057 3.943 4 C -0.239 4.239 5 C 0.215 3.785 6 N -0.559 5.559 7 C -0.249 4.249 8 H 0.044 0.956 9 C -0.028 4.028 10 N -0.910 5.910 11 Si 0.941 3.059 12 H -0.285 1.285 13 H -0.281 1.281 14 H -0.286 1.286 15 C 0.111 3.889 16 C -0.198 4.198 17 C -0.207 4.207 18 C 0.043 3.957 19 N -0.339 5.339 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.112 0.888 23 H 0.199 0.801 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.252 0.748 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 3.182 -0.423 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.167 5.167 3 C -0.090 4.090 4 C -0.253 4.253 5 C 0.088 3.912 6 N -0.275 5.275 7 C -0.379 4.379 8 H 0.062 0.938 9 C -0.225 4.225 10 N -0.554 5.554 11 Si 0.770 3.230 12 H -0.212 1.212 13 H -0.207 1.207 14 H -0.212 1.212 15 C 0.002 3.998 16 C -0.237 4.237 17 C -0.247 4.247 18 C -0.142 4.142 19 N -0.162 5.162 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.130 0.870 23 H 0.216 0.784 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.264 2.116 -0.567 13.444 hybrid contribution 1.405 -0.458 0.485 1.555 sum -11.859 1.658 -0.082 11.975 Atomic orbital electron populations 1.22119 0.72196 1.05536 1.04400 1.48746 1.07622 1.03195 1.57099 1.22614 0.90149 0.94049 1.02186 1.21241 0.96693 0.94284 1.13045 1.19201 0.91798 0.94856 0.85328 1.43585 1.47877 1.24254 1.11823 1.18900 1.04806 1.20776 0.93456 0.93850 1.25517 0.96701 1.01987 0.98306 1.70059 1.28756 1.39068 1.17494 0.85699 0.78361 0.81379 0.77568 1.21204 1.20700 1.21216 1.21376 0.99930 0.91137 0.87323 1.23085 0.95859 1.00192 1.04577 1.23255 0.95005 0.99801 1.06659 1.23628 0.94465 0.96015 1.00051 1.77114 1.01997 1.09962 1.27153 0.89489 0.89623 0.86977 0.78381 0.93829 0.90715 0.93833 0.87076 0.91427 0.87776 0.87596 0.92611 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 11.47 127.77 1.47 3.31 16 2 N -0.38 -12.18 4.01 -369.57 -1.48 -13.66 16 3 C 0.06 1.87 11.40 83.54 0.95 2.82 16 4 C -0.24 -9.91 5.68 -20.14 -0.11 -10.03 16 5 C 0.21 9.89 5.82 85.63 0.50 10.39 16 6 N -0.56 -27.23 2.78 -682.36 -1.90 -29.13 16 7 C -0.25 -13.56 8.20 84.04 0.69 -12.87 16 8 H 0.04 2.46 7.15 -2.91 -0.02 2.44 16 9 C -0.03 -1.53 4.97 84.87 0.42 -1.11 16 10 N -0.91 -51.93 11.31 21.65 0.24 -51.68 16 11 Si 0.94 45.15 29.61 68.60 2.03 47.18 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 15 C 0.11 4.51 6.61 44.99 0.30 4.80 16 16 C -0.20 -7.67 9.79 30.62 0.30 -7.37 16 17 C -0.21 -7.57 10.13 30.62 0.31 -7.26 16 18 C 0.04 1.88 11.96 85.24 1.02 2.90 16 19 N -0.34 -13.54 12.57 -57.03 -0.72 -14.26 16 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.20 4.87 8.06 -2.91 -0.02 4.84 16 24 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 25 H 0.08 3.99 5.33 -2.39 -0.01 3.98 16 26 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.11 3.92 8.11 -2.39 -0.02 3.90 16 28 H 0.07 3.03 6.82 -2.39 -0.02 3.01 16 29 H 0.10 3.34 8.14 -2.39 -0.02 3.33 16 30 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.16 7.11 8.06 -2.91 -0.02 7.09 16 Total: -1.00 -66.24 276.37 5.11 -61.13 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.10 Total: 14.84 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 5.84 Total: -14.41 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.86 Total: -108.73 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.24 5.11 -61.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604549185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.104 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds