Wall clock time and date at job start Sun Mar 29 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47373 * 2 1 4 4 O 1.42902 * 109.47360 * 240.00251 * 2 1 3 5 5 C 1.52996 * 109.47273 * 120.00190 * 2 1 3 6 6 N 1.46505 * 109.47267 * 184.99914 * 5 2 1 7 7 C 1.36847 * 119.99829 * 84.79577 * 6 5 2 8 8 H 1.08000 * 119.99446 * 219.81703 * 7 6 5 9 9 C 1.38795 * 120.00436 * 39.81636 * 7 6 5 10 10 N 1.31594 * 119.99766 * 19.51810 * 9 7 6 11 11 Si 1.86798 * 119.99957 * 199.52344 * 9 7 6 12 12 H 1.48498 * 109.47394 * 59.99796 * 11 9 7 13 13 H 1.48508 * 109.46804 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46823 * 299.99490 * 11 9 7 15 15 C 1.39293 * 119.99842 * 264.79439 * 6 5 2 16 16 C 1.39079 * 120.09306 * 359.72113 * 15 6 5 17 17 C 1.38048 * 119.91173 * 179.79013 * 16 15 6 18 18 C 1.38330 * 120.08671 * 0.46734 * 17 16 15 19 19 C 1.38330 * 120.18205 * 359.78819 * 18 17 16 20 20 C 1.38042 * 120.08629 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47423 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46972 * 299.99906 * 1 2 3 23 23 H 1.08999 * 109.47268 * 59.99344 * 1 2 3 24 24 H 0.96697 * 113.99798 * 300.00361 * 4 2 1 25 25 H 1.09003 * 109.47068 * 305.00108 * 5 2 1 26 26 H 1.08993 * 109.47262 * 64.99937 * 5 2 1 27 27 H 0.97001 * 120.00045 * 180.02562 * 10 9 7 28 28 H 1.08009 * 120.03989 * 0.02562 * 16 15 6 29 29 H 1.08002 * 119.95330 * 180.25535 * 17 16 15 30 30 H 1.07999 * 119.90604 * 179.76770 * 18 17 16 31 31 H 1.08001 * 119.95182 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.04371 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6179 1.3109 7 6 4.0849 0.4879 1.8658 8 1 4.9689 0.9146 1.4154 9 6 3.5420 1.0610 3.0074 10 7 2.7306 0.3623 3.7723 11 14 3.9631 2.8243 3.4579 12 1 3.5344 3.7309 2.3627 13 1 3.2605 3.1959 4.7124 14 1 5.4295 2.9475 3.6573 15 6 4.2930 -1.6452 0.8047 16 6 3.7006 -2.7725 0.2456 17 6 4.4900 -3.7864 -0.2589 18 6 5.8684 -3.6867 -0.2000 19 6 6.4616 -2.5695 0.3601 20 6 5.6793 -1.5491 0.8623 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.7210 -1.5951 -1.2330 25 1 1.6053 -0.2618 2.1369 26 1 1.7516 -1.7715 1.2055 27 1 2.3508 0.7629 4.5699 28 1 2.6243 -2.8527 0.2027 29 1 4.0307 -4.6603 -0.6969 30 1 6.4832 -4.4833 -0.5922 31 1 7.5381 -2.4957 0.4044 32 1 6.1431 -0.6773 1.2998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604564791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:45 Heat of formation + Delta-G solvation = -18.545007 kcal Electronic energy + Delta-G solvation = -15334.845085 eV Core-core repulsion = 12874.406142 eV Total energy + Delta-G solvation = -2460.438943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.68509 -36.89089 -35.00186 -31.91629 -30.77467 -29.83840 -28.11780 -26.18461 -23.80257 -21.70675 -20.86954 -19.92630 -17.28950 -16.79462 -15.51009 -14.94981 -14.83023 -14.31878 -13.98641 -13.70077 -13.16294 -12.83632 -12.39610 -12.15665 -11.95410 -11.54521 -11.50153 -11.14476 -10.88107 -10.59102 -10.57035 -10.35943 -10.18274 -9.82887 -9.43455 -9.16827 -8.37326 -7.87737 -6.59659 -6.09077 -3.91763 2.53988 2.74784 3.17154 3.19373 3.22128 4.08576 4.76529 4.84414 5.11186 5.15887 5.55481 5.71399 5.82155 5.88827 5.91515 6.06813 6.21583 6.25548 6.42039 6.51090 6.71808 6.80358 6.93936 7.08617 7.15732 7.43416 7.54239 7.61898 7.68783 7.99215 8.24479 8.27968 8.72095 9.32515 9.73743 10.64910 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.012333 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.891432 B = 2269.723012 C = 3162.147129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.098 0.902 4 O -0.558 6.558 5 C 0.084 3.916 6 N -0.443 5.443 7 C -0.309 4.309 8 H 0.084 0.916 9 C 0.034 3.966 10 N -0.868 5.868 11 Si 0.915 3.085 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.235 3.765 16 C -0.231 4.231 17 C -0.072 4.072 18 C -0.239 4.239 19 C -0.073 4.073 20 C -0.207 4.207 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.362 0.638 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -2.152 -4.380 5.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.024 3.976 3 H 0.116 0.884 4 O -0.363 6.363 5 C -0.040 4.040 6 N -0.131 5.131 7 C -0.438 4.438 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.505 5.505 11 Si 0.742 3.258 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.121 3.879 16 C -0.255 4.255 17 C -0.091 4.091 18 C -0.260 4.260 19 C -0.093 4.093 20 C -0.231 4.231 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.208 0.792 25 H 0.129 0.871 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.405 -1.292 -4.160 4.975 hybrid contribution -0.194 0.332 0.526 0.651 sum -2.599 -0.961 -3.634 4.570 Atomic orbital electron populations 1.22432 0.97478 1.01751 1.02048 1.22506 0.91361 0.97952 0.85818 0.88412 1.86613 1.77454 1.27928 1.44286 1.22198 0.83682 0.99142 0.99024 1.42136 1.02121 1.14870 1.53943 1.19255 1.13520 1.03726 1.07266 0.89842 1.25410 0.97653 0.99639 0.94362 1.69954 1.31828 1.35640 1.13054 0.86179 0.79007 0.82866 0.77794 1.19906 1.20947 1.19727 1.18164 0.90879 0.86798 0.92090 1.20348 0.98152 0.96018 1.10972 1.20537 0.93717 0.96947 0.97876 1.20380 0.94453 0.99947 1.11249 1.20654 0.97904 0.93741 0.96958 1.20540 0.92304 1.01100 1.09107 0.92885 0.91730 0.92571 0.79212 0.87125 0.92903 0.92199 0.88033 0.88311 0.88621 0.88196 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.53 37.15 0.35 -2.37 16 2 C 0.08 1.60 3.80 -26.74 -0.10 1.50 16 3 H 0.10 2.08 8.14 -51.92 -0.42 1.66 16 4 O -0.56 -10.71 12.40 -35.23 -0.44 -11.15 16 5 C 0.08 1.84 4.59 -4.04 -0.02 1.82 16 6 N -0.44 -10.92 2.58 -113.14 -0.29 -11.21 16 7 C -0.31 -8.06 8.36 -15.11 -0.13 -8.18 16 8 H 0.08 2.19 6.95 -52.49 -0.36 1.82 16 9 C 0.03 0.86 5.03 -17.45 -0.09 0.77 16 10 N -0.87 -22.89 11.44 55.49 0.63 -22.26 16 11 Si 0.91 19.87 29.60 -169.99 -5.03 14.84 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 15 C 0.23 5.59 6.34 -83.84 -0.53 5.05 16 16 C -0.23 -4.87 8.29 -39.34 -0.33 -5.19 16 17 C -0.07 -1.38 10.04 -39.62 -0.40 -1.78 16 18 C -0.24 -4.59 10.04 -39.51 -0.40 -4.99 16 19 C -0.07 -1.49 10.04 -39.62 -0.40 -1.89 16 20 C -0.21 -4.79 9.27 -39.34 -0.36 -5.16 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.36 5.77 7.84 45.56 0.36 6.13 16 25 H 0.11 2.64 5.58 -51.93 -0.29 2.35 16 26 H 0.05 1.09 5.91 -51.93 -0.31 0.78 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.10 1.95 5.07 -52.48 -0.27 1.69 16 29 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 2.72 6.50 -52.48 -0.34 2.38 16 LS Contribution 265.57 15.07 4.00 4.00 Total: -1.00 -28.00 265.57 -6.82 -34.82 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -3.31 Total: 11.36 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.39 Total: -20.40 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.34 Total: -33.47 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.44 Total: -11.15 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.00 -6.82 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604564791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.276 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds