Wall clock time and date at job start Sun Mar 29 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47373 * 2 1 4 4 O 1.42902 * 109.47360 * 240.00251 * 2 1 3 5 5 C 1.52996 * 109.47273 * 120.00190 * 2 1 3 6 6 N 1.46505 * 109.47267 * 184.99914 * 5 2 1 7 7 C 1.36847 * 119.99829 * 84.79577 * 6 5 2 8 8 H 1.08000 * 119.99446 * 219.81703 * 7 6 5 9 9 C 1.38795 * 120.00436 * 39.81636 * 7 6 5 10 10 N 1.31594 * 119.99766 * 19.51810 * 9 7 6 11 11 Si 1.86798 * 119.99957 * 199.52344 * 9 7 6 12 12 H 1.48498 * 109.47394 * 59.99796 * 11 9 7 13 13 H 1.48508 * 109.46804 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46823 * 299.99490 * 11 9 7 15 15 C 1.39293 * 119.99842 * 264.79439 * 6 5 2 16 16 C 1.39079 * 120.09306 * 359.72113 * 15 6 5 17 17 C 1.38048 * 119.91173 * 179.79013 * 16 15 6 18 18 C 1.38330 * 120.08671 * 0.46734 * 17 16 15 19 19 C 1.38330 * 120.18205 * 359.78819 * 18 17 16 20 20 C 1.38042 * 120.08629 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47423 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46972 * 299.99906 * 1 2 3 23 23 H 1.08999 * 109.47268 * 59.99344 * 1 2 3 24 24 H 0.96697 * 113.99798 * 300.00361 * 4 2 1 25 25 H 1.09003 * 109.47068 * 305.00108 * 5 2 1 26 26 H 1.08993 * 109.47262 * 64.99937 * 5 2 1 27 27 H 0.97001 * 120.00045 * 180.02562 * 10 9 7 28 28 H 1.08009 * 120.03989 * 0.02562 * 16 15 6 29 29 H 1.08002 * 119.95330 * 180.25535 * 17 16 15 30 30 H 1.07999 * 119.90604 * 179.76770 * 18 17 16 31 31 H 1.08001 * 119.95182 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.04371 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6179 1.3109 7 6 4.0849 0.4879 1.8658 8 1 4.9689 0.9146 1.4154 9 6 3.5420 1.0610 3.0074 10 7 2.7306 0.3623 3.7723 11 14 3.9631 2.8243 3.4579 12 1 3.5344 3.7309 2.3627 13 1 3.2605 3.1959 4.7124 14 1 5.4295 2.9475 3.6573 15 6 4.2930 -1.6452 0.8047 16 6 3.7006 -2.7725 0.2456 17 6 4.4900 -3.7864 -0.2589 18 6 5.8684 -3.6867 -0.2000 19 6 6.4616 -2.5695 0.3601 20 6 5.6793 -1.5491 0.8623 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.7210 -1.5951 -1.2330 25 1 1.6053 -0.2618 2.1369 26 1 1.7516 -1.7715 1.2055 27 1 2.3508 0.7629 4.5699 28 1 2.6243 -2.8527 0.2027 29 1 4.0307 -4.6603 -0.6969 30 1 6.4832 -4.4833 -0.5922 31 1 7.5381 -2.4957 0.4044 32 1 6.1431 -0.6773 1.2998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604564791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:45 Heat of formation + Delta-G solvation = -35.693270 kcal Electronic energy + Delta-G solvation = -15335.588689 eV Core-core repulsion = 12874.406142 eV Total energy + Delta-G solvation = -2461.182547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34821 -38.44481 -36.69552 -33.78029 -32.25752 -31.45261 -29.77230 -27.87495 -25.53226 -23.28128 -22.48797 -21.59147 -19.09275 -18.47963 -17.09322 -16.74239 -16.36723 -15.94038 -15.71745 -15.24461 -14.75742 -14.45650 -14.00094 -13.74064 -13.55070 -13.18121 -12.89607 -12.86226 -12.62446 -12.26846 -12.24001 -11.94299 -11.74117 -11.47277 -11.06304 -10.91204 -10.13595 -9.50461 -8.48166 -7.90026 -5.86259 0.89829 1.09855 1.40078 1.44517 1.49155 2.28881 2.91470 3.20293 3.42395 3.65997 4.08045 4.26403 4.33762 4.41592 4.43107 4.59171 4.69555 4.92095 4.94354 5.06863 5.16609 5.20990 5.31506 5.35715 5.49941 5.52665 5.91278 5.94993 6.05690 6.19412 6.54110 6.84054 6.93563 7.51691 7.87881 8.73587 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.012333 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.891432 B = 2269.723012 C = 3162.147129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.068 0.932 4 O -0.570 6.570 5 C 0.089 3.911 6 N -0.466 5.466 7 C -0.325 4.325 8 H 0.067 0.933 9 C -0.004 4.004 10 N -0.896 5.896 11 Si 0.974 3.026 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.272 1.272 15 C 0.204 3.796 16 C -0.236 4.236 17 C -0.070 4.070 18 C -0.231 4.231 19 C -0.076 4.076 20 C -0.241 4.241 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.377 0.623 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -3.524 -5.497 7.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.086 0.914 4 O -0.376 6.376 5 C -0.036 4.036 6 N -0.156 5.156 7 C -0.454 4.454 8 H 0.085 0.915 9 C -0.206 4.206 10 N -0.534 5.534 11 Si 0.798 3.202 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.197 1.197 15 C 0.093 3.907 16 C -0.260 4.260 17 C -0.088 4.088 18 C -0.252 4.252 19 C -0.095 4.095 20 C -0.264 4.264 21 H 0.092 0.908 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.225 0.775 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.643 -2.696 -5.299 6.507 hybrid contribution -0.012 0.578 0.776 0.968 sum -2.655 -2.118 -4.523 5.656 Atomic orbital electron populations 1.22312 0.94085 1.03389 1.02748 1.22270 0.93788 0.95960 0.84705 0.91422 1.86572 1.78033 1.29166 1.43872 1.22184 0.82467 0.99655 0.99258 1.42264 1.03062 1.15055 1.55213 1.19298 1.13613 1.04808 1.07677 0.91510 1.26074 0.97674 1.02824 0.94022 1.70044 1.32928 1.36933 1.13461 0.85279 0.78607 0.78681 0.77598 1.19517 1.20315 1.19710 1.18601 0.91345 0.87903 0.92896 1.20622 0.99318 0.95544 1.10475 1.21024 0.93835 0.97413 0.96555 1.20871 0.95084 0.99944 1.09347 1.20985 0.99178 0.93261 0.96053 1.20638 0.92845 1.01817 1.11148 0.90779 0.91779 0.91078 0.77513 0.89477 0.91971 0.92182 0.86537 0.84346 0.85065 0.85684 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.83 9.53 71.98 0.69 -4.14 16 2 C 0.09 3.56 3.80 30.59 0.12 3.67 16 3 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 4 O -0.57 -21.34 12.40 -148.98 -1.85 -23.19 16 5 C 0.09 3.93 4.59 86.38 0.40 4.33 16 6 N -0.47 -23.63 2.58 -511.85 -1.32 -24.95 16 7 C -0.33 -17.68 8.36 84.04 0.70 -16.98 16 8 H 0.07 3.72 6.95 -2.91 -0.02 3.70 16 9 C 0.00 -0.23 5.03 84.86 0.43 0.20 16 10 N -0.90 -48.55 11.44 21.65 0.25 -48.30 16 11 Si 0.97 41.85 29.60 68.60 2.03 43.88 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 C 0.20 9.82 6.34 38.36 0.24 10.07 16 16 C -0.24 -9.55 8.29 22.43 0.19 -9.37 16 17 C -0.07 -2.42 10.04 22.25 0.22 -2.20 16 18 C -0.23 -8.06 10.04 22.31 0.22 -7.84 16 19 C -0.08 -2.97 10.04 22.25 0.22 -2.74 16 20 C -0.24 -11.34 9.27 22.43 0.21 -11.13 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.38 11.28 7.84 -74.06 -0.58 10.70 16 25 H 0.09 4.28 5.58 -2.39 -0.01 4.27 16 26 H 0.06 2.54 5.91 -2.39 -0.01 2.52 16 27 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.12 4.24 5.07 -2.91 -0.01 4.23 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.09 4.68 6.50 -2.91 -0.02 4.66 16 Total: -1.00 -61.36 265.57 3.29 -58.07 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.54 Total: 30.62 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.64 Total: -36.14 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.07 Total: -73.24 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.85 Total: -23.19 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -61.36 3.29 -58.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604564791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.376 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds