Wall clock time and date at job start Sun Mar 29 2020 22:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 O 1.42899 * 109.47007 * 119.99951 * 2 1 3 5 5 C 1.53003 * 109.47164 * 240.00005 * 2 1 3 6 6 N 1.46502 * 109.46879 * 180.02562 * 5 2 1 7 7 C 1.36849 * 119.99928 * 96.27803 * 6 5 2 8 8 H 1.07998 * 119.99863 * 218.50940 * 7 6 5 9 9 C 1.38797 * 119.99774 * 38.50709 * 7 6 5 10 10 N 1.31594 * 119.99966 * 18.61068 * 9 7 6 11 11 Si 1.86798 * 119.99702 * 198.60384 * 9 7 6 12 12 H 1.48499 * 109.47354 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47057 * 120.00594 * 11 9 7 14 14 H 1.48503 * 109.47134 * 240.00215 * 11 9 7 15 15 C 1.39295 * 119.99843 * 276.27644 * 6 5 2 16 16 C 1.39078 * 120.09130 * 359.72706 * 15 6 5 17 17 C 1.38051 * 119.91231 * 179.79322 * 16 15 6 18 18 C 1.38338 * 120.08549 * 0.46061 * 17 16 15 19 19 C 1.38329 * 120.17984 * 359.78949 * 18 17 16 20 20 C 1.38056 * 120.09197 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47277 * 60.00235 * 1 2 3 22 22 H 1.09000 * 109.47349 * 300.00516 * 1 2 3 23 23 H 1.09004 * 109.47434 * 180.02562 * 1 2 3 24 24 H 0.96698 * 114.00237 * 300.00260 * 4 2 1 25 25 H 1.08998 * 109.47142 * 299.99928 * 5 2 1 26 26 H 1.09003 * 109.46718 * 59.99891 * 5 2 1 27 27 H 0.96999 * 119.99278 * 180.02562 * 10 9 7 28 28 H 1.07996 * 120.04530 * 0.02562 * 16 15 6 29 29 H 1.07992 * 119.96210 * 180.25402 * 17 16 15 30 30 H 1.08000 * 119.91080 * 179.76980 * 18 17 16 31 31 H 1.07999 * 119.95583 * 179.97438 * 19 18 17 32 32 H 1.07989 * 120.04605 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 7 3.5050 -0.7218 -1.2489 7 6 4.1888 -1.8071 -0.7721 8 1 5.0925 -1.6663 -0.1978 9 6 3.7207 -3.0887 -1.0266 10 7 2.8617 -3.2939 -2.0021 11 14 4.3104 -4.5224 0.0156 12 1 5.2665 -4.0298 1.0395 13 1 3.1482 -5.1563 0.6884 14 1 4.9849 -5.5209 -0.8524 15 6 4.2020 0.3825 -1.7339 16 6 3.5090 1.4842 -2.2242 17 6 4.2034 2.5783 -2.7000 18 6 5.5868 2.5760 -2.6984 19 6 6.2798 1.4801 -2.2164 20 6 5.5928 0.3840 -1.7343 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.7209 -0.2702 1.9979 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 2.5344 -4.1895 -2.1797 28 1 2.4290 1.4852 -2.2292 29 1 3.6661 3.4358 -3.0771 30 1 6.1272 3.4320 -3.0747 31 1 7.3598 1.4820 -2.2172 32 1 6.1345 -0.4713 -1.3586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604564792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:48 Heat of formation + Delta-G solvation = -15.855028 kcal Electronic energy + Delta-G solvation = -15292.863663 eV Core-core repulsion = 12832.541367 eV Total energy + Delta-G solvation = -2460.322297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.60263 -36.84351 -34.99018 -31.93512 -30.88129 -29.74382 -28.13843 -26.16528 -23.76957 -21.43835 -20.89788 -19.80276 -17.28656 -16.81567 -16.14845 -14.87492 -14.72098 -14.04036 -13.93583 -13.28663 -13.21861 -12.84619 -12.35390 -12.20586 -11.99865 -11.50826 -11.42823 -11.09832 -10.96682 -10.68720 -10.44230 -10.27935 -10.15403 -9.65595 -9.31394 -9.16977 -8.35404 -7.89333 -6.51873 -6.08023 -3.77464 2.52534 2.72650 3.24187 3.28720 3.34137 4.18510 4.83787 4.88343 4.96713 5.22774 5.51089 5.71053 5.78521 5.88323 5.92279 6.08300 6.17565 6.39147 6.44797 6.49112 6.57476 6.71959 6.92364 7.14258 7.26060 7.50215 7.55194 7.62313 7.68742 8.01921 8.28615 8.36573 8.78994 9.40468 9.78650 10.76361 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.012214 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.565531 B = 2291.822077 C = 3125.218194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.044 0.956 4 O -0.541 6.541 5 C 0.124 3.876 6 N -0.436 5.436 7 C -0.289 4.289 8 H 0.083 0.917 9 C 0.035 3.965 10 N -0.874 5.874 11 Si 0.919 3.081 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.285 1.285 15 C 0.221 3.779 16 C -0.242 4.242 17 C -0.070 4.070 18 C -0.242 4.242 19 C -0.072 4.072 20 C -0.206 4.206 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.355 0.645 25 H 0.113 0.887 26 H 0.060 0.940 27 H 0.265 0.735 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 5.805 2.629 6.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.022 3.978 3 H 0.062 0.938 4 O -0.343 6.343 5 C -0.001 4.001 6 N -0.122 5.122 7 C -0.417 4.417 8 H 0.101 0.899 9 C -0.169 4.169 10 N -0.511 5.511 11 Si 0.746 3.254 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.211 1.211 15 C 0.106 3.894 16 C -0.266 4.266 17 C -0.089 4.089 18 C -0.264 4.264 19 C -0.092 4.092 20 C -0.230 4.230 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.199 0.801 25 H 0.130 0.870 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.532 4.955 2.190 5.980 hybrid contribution -0.204 -0.312 0.837 0.916 sum -2.736 4.643 3.027 6.181 Atomic orbital electron populations 1.22466 0.97521 1.02454 1.01464 1.22442 0.91424 0.95620 0.88361 0.93797 1.86836 1.76598 1.56299 1.14545 1.21502 0.82621 1.03711 0.92266 1.42229 1.02696 1.12521 1.54748 1.19225 1.09720 0.83350 1.29420 0.89928 1.25321 0.97453 0.98687 0.95392 1.69982 1.32232 1.22385 1.26480 0.85991 0.78585 0.80879 0.79902 1.19341 1.20741 1.21098 1.18232 0.91630 0.88872 0.90703 1.20394 0.98320 0.95864 1.12041 1.20534 0.94087 0.96416 0.97839 1.20373 0.94038 0.99703 1.12266 1.20662 0.97961 0.93395 0.97136 1.20539 0.92773 0.99777 1.09885 0.92057 0.93106 0.91903 0.80094 0.86960 0.92169 0.92462 0.87903 0.88331 0.88617 0.88163 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.53 37.16 0.35 -2.39 16 2 C 0.08 1.56 3.70 -26.73 -0.10 1.46 16 3 H 0.04 0.84 7.53 -51.93 -0.39 0.45 16 4 O -0.54 -10.89 12.89 -35.23 -0.45 -11.34 16 5 C 0.12 2.83 4.26 -4.04 -0.02 2.81 16 6 N -0.44 -11.04 2.53 -113.13 -0.29 -11.32 16 7 C -0.29 -7.77 8.13 -15.11 -0.12 -7.90 16 8 H 0.08 2.24 6.88 -52.49 -0.36 1.88 16 9 C 0.03 0.93 4.95 -17.45 -0.09 0.84 16 10 N -0.87 -23.97 11.45 55.49 0.64 -23.34 16 11 Si 0.92 21.03 29.59 -169.99 -5.03 16.00 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.22 5.32 6.49 -83.84 -0.54 4.77 16 16 C -0.24 -5.21 8.75 -39.34 -0.34 -5.55 16 17 C -0.07 -1.35 10.04 -39.61 -0.40 -1.75 16 18 C -0.24 -4.66 10.04 -39.51 -0.40 -5.05 16 19 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 20 C -0.21 -4.77 9.27 -39.33 -0.36 -5.14 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.36 5.23 9.08 45.56 0.41 5.65 16 25 H 0.11 2.87 5.57 -51.93 -0.29 2.58 16 26 H 0.06 1.31 6.54 -51.93 -0.34 0.97 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.10 2.07 6.04 -52.49 -0.32 1.75 16 29 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.12 2.75 6.47 -52.49 -0.34 2.41 16 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -29.54 268.02 -6.81 -36.35 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.30 Total: 9.36 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.42 Total: -19.74 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.35 Total: -34.66 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.45 Total: -11.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.54 -6.81 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604564792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.495 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds