Wall clock time and date at job start Sun Mar 29 2020 22:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 O 1.42899 * 109.47007 * 119.99951 * 2 1 3 5 5 C 1.53003 * 109.47164 * 240.00005 * 2 1 3 6 6 N 1.46502 * 109.46879 * 180.02562 * 5 2 1 7 7 C 1.36849 * 119.99928 * 96.27803 * 6 5 2 8 8 H 1.07998 * 119.99863 * 218.50940 * 7 6 5 9 9 C 1.38797 * 119.99774 * 38.50709 * 7 6 5 10 10 N 1.31594 * 119.99966 * 18.61068 * 9 7 6 11 11 Si 1.86798 * 119.99702 * 198.60384 * 9 7 6 12 12 H 1.48499 * 109.47354 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47057 * 120.00594 * 11 9 7 14 14 H 1.48503 * 109.47134 * 240.00215 * 11 9 7 15 15 C 1.39295 * 119.99843 * 276.27644 * 6 5 2 16 16 C 1.39078 * 120.09130 * 359.72706 * 15 6 5 17 17 C 1.38051 * 119.91231 * 179.79322 * 16 15 6 18 18 C 1.38338 * 120.08549 * 0.46061 * 17 16 15 19 19 C 1.38329 * 120.17984 * 359.78949 * 18 17 16 20 20 C 1.38056 * 120.09197 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47277 * 60.00235 * 1 2 3 22 22 H 1.09000 * 109.47349 * 300.00516 * 1 2 3 23 23 H 1.09004 * 109.47434 * 180.02562 * 1 2 3 24 24 H 0.96698 * 114.00237 * 300.00260 * 4 2 1 25 25 H 1.08998 * 109.47142 * 299.99928 * 5 2 1 26 26 H 1.09003 * 109.46718 * 59.99891 * 5 2 1 27 27 H 0.96999 * 119.99278 * 180.02562 * 10 9 7 28 28 H 1.07996 * 120.04530 * 0.02562 * 16 15 6 29 29 H 1.07992 * 119.96210 * 180.25402 * 17 16 15 30 30 H 1.08000 * 119.91080 * 179.76980 * 18 17 16 31 31 H 1.07999 * 119.95583 * 179.97438 * 19 18 17 32 32 H 1.07989 * 120.04605 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 7 3.5050 -0.7218 -1.2489 7 6 4.1888 -1.8071 -0.7721 8 1 5.0925 -1.6663 -0.1978 9 6 3.7207 -3.0887 -1.0266 10 7 2.8617 -3.2939 -2.0021 11 14 4.3104 -4.5224 0.0156 12 1 5.2665 -4.0298 1.0395 13 1 3.1482 -5.1563 0.6884 14 1 4.9849 -5.5209 -0.8524 15 6 4.2020 0.3825 -1.7339 16 6 3.5090 1.4842 -2.2242 17 6 4.2034 2.5783 -2.7000 18 6 5.5868 2.5760 -2.6984 19 6 6.2798 1.4801 -2.2164 20 6 5.5928 0.3840 -1.7343 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.7209 -0.2702 1.9979 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 2.5344 -4.1895 -2.1797 28 1 2.4290 1.4852 -2.2292 29 1 3.6661 3.4358 -3.0771 30 1 6.1272 3.4320 -3.0747 31 1 7.3598 1.4820 -2.2172 32 1 6.1345 -0.4713 -1.3586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604564792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:48 Heat of formation + Delta-G solvation = -34.831941 kcal Electronic energy + Delta-G solvation = -15293.686564 eV Core-core repulsion = 12832.541367 eV Total energy + Delta-G solvation = -2461.145197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29691 -38.40170 -36.70478 -33.83383 -32.42314 -31.35328 -29.82933 -27.86286 -25.54551 -23.06274 -22.50199 -21.49156 -19.06995 -18.54017 -17.75775 -16.71956 -16.34397 -15.78136 -15.50830 -14.86827 -14.80965 -14.53128 -14.01041 -13.84304 -13.36559 -13.27824 -12.97478 -12.86766 -12.59943 -12.47573 -12.16726 -11.92652 -11.78764 -11.35084 -11.01607 -10.79029 -10.19750 -9.53728 -8.44721 -7.93870 -5.77881 0.86486 1.05891 1.39850 1.43375 1.52604 2.31774 2.98369 3.20928 3.37545 3.56741 4.15541 4.30428 4.34812 4.38356 4.40870 4.58476 4.69599 4.92389 4.93889 5.03279 5.05713 5.17026 5.27240 5.43877 5.49455 5.53410 5.89474 5.92709 6.03761 6.21916 6.52954 6.87841 7.08362 7.53905 7.88345 8.79437 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.012214 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.565531 B = 2291.822077 C = 3125.218194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.046 0.954 4 O -0.570 6.570 5 C 0.125 3.875 6 N -0.461 5.461 7 C -0.298 4.298 8 H 0.067 0.933 9 C -0.009 4.009 10 N -0.904 5.904 11 Si 0.977 3.023 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.193 3.807 16 C -0.249 4.249 17 C -0.067 4.067 18 C -0.231 4.231 19 C -0.073 4.073 20 C -0.237 4.237 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.378 0.622 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.265 0.735 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 7.892 2.605 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.028 3.972 3 H 0.063 0.937 4 O -0.376 6.376 5 C 0.001 3.999 6 N -0.150 5.150 7 C -0.428 4.428 8 H 0.084 0.916 9 C -0.209 4.209 10 N -0.543 5.543 11 Si 0.802 3.198 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.206 1.206 15 C 0.080 3.920 16 C -0.273 4.273 17 C -0.086 4.086 18 C -0.252 4.252 19 C -0.091 4.091 20 C -0.260 4.260 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.225 0.775 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.537 7.086 2.172 7.834 hybrid contribution -0.105 -0.742 0.774 1.077 sum -2.642 6.344 2.946 7.477 Atomic orbital electron populations 1.22358 0.94315 1.02431 1.03677 1.22303 0.93727 0.94552 0.86595 0.93651 1.86767 1.77453 1.57321 1.16011 1.21456 0.81745 1.02362 0.94377 1.42306 1.03395 1.12686 1.56585 1.19227 1.09681 0.84512 1.29334 0.91565 1.26001 0.97942 1.00589 0.96349 1.70077 1.33681 1.22667 1.27892 0.85114 0.78076 0.78134 0.78451 1.19196 1.20496 1.20640 1.18658 0.92304 0.89356 0.91633 1.20648 0.99064 0.95754 1.11791 1.21012 0.94567 0.96702 0.96334 1.20883 0.94297 1.00029 1.09964 1.21014 0.99564 0.92647 0.95922 1.20640 0.92911 1.00686 1.11806 0.90628 0.90077 0.93021 0.77517 0.90061 0.92056 0.92548 0.86955 0.84435 0.84850 0.85375 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 9.53 71.98 0.69 -4.18 16 2 C 0.09 3.33 3.70 30.59 0.11 3.45 16 3 H 0.05 1.69 7.53 -2.39 -0.02 1.67 16 4 O -0.57 -22.98 12.89 -148.98 -1.92 -24.90 16 5 C 0.12 5.86 4.26 86.38 0.37 6.22 16 6 N -0.46 -24.03 2.53 -511.84 -1.30 -25.33 16 7 C -0.30 -16.74 8.13 84.04 0.68 -16.06 16 8 H 0.07 3.80 6.88 -2.91 -0.02 3.78 16 9 C -0.01 -0.48 4.95 84.86 0.42 -0.06 16 10 N -0.90 -51.44 11.45 21.65 0.25 -51.20 16 11 Si 0.98 44.45 29.59 68.60 2.03 46.48 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.19 9.38 6.49 38.36 0.25 9.63 16 16 C -0.25 -10.34 8.75 22.43 0.20 -10.14 16 17 C -0.07 -2.37 10.04 22.25 0.22 -2.15 16 18 C -0.23 -7.93 10.04 22.32 0.22 -7.71 16 19 C -0.07 -2.79 10.04 22.25 0.22 -2.56 16 20 C -0.24 -11.07 9.27 22.43 0.21 -10.86 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.38 10.80 9.08 -74.06 -0.67 10.12 16 25 H 0.08 4.32 5.57 -2.39 -0.01 4.31 16 26 H 0.06 2.73 6.54 -2.39 -0.02 2.71 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.11 4.36 6.04 -2.91 -0.02 4.34 16 29 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.10 4.76 6.47 -2.92 -0.02 4.74 16 Total: -1.00 -65.26 268.02 3.10 -62.16 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.45 Total: 27.20 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.60 Total: -34.42 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.05 Total: -76.52 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.92 Total: -24.90 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.26 3.10 -62.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604564792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.327 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds