Wall clock time and date at job start Sun Mar 29 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00161 * 2 1 4 4 H 1.07995 * 119.99878 * 174.56014 * 3 2 1 5 5 C 1.38809 * 119.99702 * 354.83186 * 3 2 1 6 6 N 1.31625 * 120.00253 * 9.06550 * 5 3 2 7 7 Si 1.86801 * 120.00030 * 189.06080 * 5 3 2 8 8 H 1.48499 * 109.46902 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46921 * 119.99990 * 7 5 3 10 10 H 1.48501 * 109.47272 * 240.00460 * 7 5 3 11 11 C 1.46498 * 119.99861 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.46854 * 185.50469 * 11 2 1 13 13 C 1.52999 * 109.47659 * 65.50045 * 11 2 1 14 14 O 1.42902 * 109.46633 * 295.00179 * 13 11 2 15 15 C 1.50706 * 109.47002 * 305.49676 * 11 2 1 16 16 C 1.38226 * 119.99987 * 325.67812 * 15 11 2 17 17 C 1.38237 * 120.00129 * 179.78698 * 16 15 11 18 18 C 1.38239 * 119.99593 * 0.43846 * 17 16 15 19 19 C 1.38235 * 120.00000 * 359.81494 * 18 17 16 20 20 C 1.38233 * 119.99657 * 145.95055 * 15 11 2 21 21 H 1.09004 * 109.47177 * 61.53620 * 1 2 3 22 22 H 1.09002 * 109.47097 * 181.52820 * 1 2 3 23 23 H 1.08997 * 109.47477 * 301.53259 * 1 2 3 24 24 H 0.96994 * 120.00276 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46941 * 55.00016 * 13 11 2 26 26 H 1.08998 * 109.47506 * 174.99692 * 13 11 2 27 27 H 0.96704 * 113.99554 * 179.97438 * 14 13 11 28 28 H 1.08000 * 120.00296 * 359.97438 * 16 15 11 29 29 H 1.08000 * 120.00453 * 180.27499 * 17 16 15 30 30 H 1.08004 * 119.99921 * 179.83292 * 18 17 16 31 31 H 1.08000 * 119.99813 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.00310 * 359.97438 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2260 1.1880 0.0887 5 6 1.4599 2.3856 -0.1083 6 7 0.1459 2.3985 -0.0315 7 14 2.3962 3.9818 -0.3629 8 1 3.8530 3.6981 -0.4151 9 1 1.9684 4.6083 -1.6395 10 1 2.1118 4.9076 0.7628 11 6 2.1974 -1.2687 -0.0006 12 1 3.2650 -1.0719 0.0981 13 6 1.9344 -2.0090 -1.3135 14 8 0.5537 -2.3695 -1.3886 15 6 1.7341 -2.1168 1.1559 16 6 1.3657 -1.5197 2.3468 17 6 0.9365 -2.2972 3.4061 18 6 0.8843 -3.6726 3.2773 19 6 1.2576 -4.2701 2.0880 20 6 1.6828 -3.4922 1.0273 21 1 -0.3634 0.4898 -0.9035 22 1 -0.3633 -1.0273 0.0274 23 1 -0.3634 0.5374 0.8759 24 1 -0.3361 3.2368 -0.1068 25 1 2.1870 -1.3610 -2.1528 26 1 2.5477 -2.9092 -1.3522 27 1 0.3143 -2.8430 -2.1971 28 1 1.4104 -0.4454 2.4488 29 1 0.6445 -1.8304 4.3352 30 1 0.5515 -4.2803 4.1058 31 1 1.2172 -5.3446 1.9875 32 1 1.9744 -3.9590 0.0981 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609123106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:46 Heat of formation + Delta-G solvation = 13.409610 kcal Electronic energy + Delta-G solvation = -15402.954523 eV Core-core repulsion = 12943.901236 eV Total energy + Delta-G solvation = -2459.053287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.00052 -36.57554 -34.82263 -32.10437 -30.37690 -29.65572 -27.46775 -25.74488 -23.44835 -21.85024 -21.52705 -19.22136 -17.23016 -16.52348 -16.30006 -15.01011 -14.46852 -14.18973 -13.99658 -13.43297 -13.06910 -12.71392 -12.41923 -12.17387 -11.78203 -11.43741 -11.19059 -10.75332 -10.70411 -10.39799 -10.26933 -9.96021 -9.86761 -9.63209 -9.26883 -8.46316 -8.28506 -8.02523 -6.85524 -5.56600 -3.00226 1.99028 2.04014 3.40814 3.47091 3.49250 4.39763 4.55428 4.94689 5.34107 5.42185 5.46061 5.55628 5.63779 5.71747 5.95692 6.00431 6.18510 6.23604 6.41374 6.52778 6.66213 6.70766 7.03509 7.14524 7.25923 7.43672 7.65910 7.80646 7.92807 8.09705 8.26136 8.47291 9.34575 9.97479 10.42599 11.40350 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.009257 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.297798 B = 3024.090423 C = 3374.816144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.595 5.595 3 C -0.252 4.252 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.211 3.789 12 H 0.083 0.917 13 C 0.065 3.935 14 O -0.551 6.551 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.111 4.111 21 H 0.029 0.971 22 H 0.014 0.986 23 H 0.035 0.965 24 H 0.248 0.752 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.357 0.643 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -11.108 1.194 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.316 5.316 3 C -0.381 4.381 4 H 0.091 0.909 5 C -0.199 4.199 6 N -0.557 5.557 7 Si 0.735 3.265 8 H -0.206 1.206 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.101 3.899 12 H 0.101 0.899 13 C -0.016 4.016 14 O -0.354 6.354 15 C -0.073 4.073 16 C -0.107 4.107 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.129 4.129 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.202 0.798 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.474 -10.605 1.771 11.033 hybrid contribution 0.409 0.659 -0.736 1.069 sum 2.884 -9.947 1.035 10.408 Atomic orbital electron populations 1.20931 0.80754 0.94353 1.00461 1.44036 1.02791 0.99144 1.85674 1.19410 0.91055 0.83857 1.43773 0.90869 1.24852 0.95619 0.97705 1.01753 1.70320 1.05205 1.24495 1.55714 0.86175 0.78861 0.84012 0.77473 1.20570 1.21779 1.21912 1.19360 0.95835 0.85836 0.88868 0.89891 1.22936 0.82228 0.96288 1.00112 1.86740 1.26040 1.78814 1.43836 1.20731 0.97121 0.93519 0.95908 1.21224 0.96539 1.00890 0.92081 1.21107 1.01105 0.93812 0.98868 1.20952 1.02193 0.94902 0.97524 1.20953 1.01506 0.98877 0.93947 1.20976 1.00438 0.93585 0.97916 0.95223 0.96736 0.94610 0.94136 0.93691 0.95267 0.79807 0.85060 0.86994 0.87302 0.87276 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.72 7.13 59.84 0.43 5.15 16 2 N -0.59 -15.00 2.02 -174.81 -0.35 -15.35 16 3 C -0.25 -6.89 9.81 -15.06 -0.15 -7.03 16 4 H 0.07 1.93 7.67 -52.49 -0.40 1.52 16 5 C 0.00 -0.08 5.44 -17.43 -0.09 -0.17 16 6 N -0.91 -26.89 9.48 55.49 0.53 -26.36 16 7 Si 0.90 22.05 29.56 -169.99 -5.03 17.03 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.21 4.37 3.03 -69.08 -0.21 4.16 16 12 H 0.08 1.67 7.78 -51.93 -0.40 1.27 16 13 C 0.06 1.14 6.08 37.16 0.23 1.37 16 14 O -0.55 -9.86 9.97 -35.23 -0.35 -10.21 16 15 C -0.07 -1.38 4.36 -104.63 -0.46 -1.84 16 16 C -0.09 -1.80 8.67 -39.59 -0.34 -2.14 16 17 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 18 C -0.14 -2.14 10.05 -39.58 -0.40 -2.54 16 19 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 20 C -0.11 -1.87 8.60 -39.58 -0.34 -2.21 16 21 H 0.03 0.85 7.10 -51.93 -0.37 0.48 16 22 H 0.01 0.36 5.61 -51.93 -0.29 0.07 16 23 H 0.04 1.03 7.00 -51.93 -0.36 0.66 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.43 6.87 -51.93 -0.36 0.07 16 27 H 0.36 4.59 9.12 45.56 0.42 5.01 16 28 H 0.13 2.98 7.50 -52.49 -0.39 2.59 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.71 6.15 -52.49 -0.32 1.39 16 LS Contribution 261.04 15.07 3.93 3.93 Total: -1.00 -30.96 261.04 -6.72 -37.67 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.31 Total: 3.69 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.13 Total: -10.40 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.17 Total: -41.71 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.35 Total: -10.21 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.96 -6.72 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609123106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.083 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds