Wall clock time and date at job start Sun Mar 29 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 120.00161 * 2 1 4 4 H 1.07995 * 119.99878 * 174.56014 * 3 2 1 5 5 C 1.38809 * 119.99702 * 354.83186 * 3 2 1 6 6 N 1.31625 * 120.00253 * 9.06550 * 5 3 2 7 7 Si 1.86801 * 120.00030 * 189.06080 * 5 3 2 8 8 H 1.48499 * 109.46902 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46921 * 119.99990 * 7 5 3 10 10 H 1.48501 * 109.47272 * 240.00460 * 7 5 3 11 11 C 1.46498 * 119.99861 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.46854 * 185.50469 * 11 2 1 13 13 C 1.52999 * 109.47659 * 65.50045 * 11 2 1 14 14 O 1.42902 * 109.46633 * 295.00179 * 13 11 2 15 15 C 1.50706 * 109.47002 * 305.49676 * 11 2 1 16 16 C 1.38226 * 119.99987 * 325.67812 * 15 11 2 17 17 C 1.38237 * 120.00129 * 179.78698 * 16 15 11 18 18 C 1.38239 * 119.99593 * 0.43846 * 17 16 15 19 19 C 1.38235 * 120.00000 * 359.81494 * 18 17 16 20 20 C 1.38233 * 119.99657 * 145.95055 * 15 11 2 21 21 H 1.09004 * 109.47177 * 61.53620 * 1 2 3 22 22 H 1.09002 * 109.47097 * 181.52820 * 1 2 3 23 23 H 1.08997 * 109.47477 * 301.53259 * 1 2 3 24 24 H 0.96994 * 120.00276 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46941 * 55.00016 * 13 11 2 26 26 H 1.08998 * 109.47506 * 174.99692 * 13 11 2 27 27 H 0.96704 * 113.99554 * 179.97438 * 14 13 11 28 28 H 1.08000 * 120.00296 * 359.97438 * 16 15 11 29 29 H 1.08000 * 120.00453 * 180.27499 * 17 16 15 30 30 H 1.08004 * 119.99921 * 179.83292 * 18 17 16 31 31 H 1.08000 * 119.99813 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.00310 * 359.97438 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2260 1.1880 0.0887 5 6 1.4599 2.3856 -0.1083 6 7 0.1459 2.3985 -0.0315 7 14 2.3962 3.9818 -0.3629 8 1 3.8530 3.6981 -0.4151 9 1 1.9684 4.6083 -1.6395 10 1 2.1118 4.9076 0.7628 11 6 2.1974 -1.2687 -0.0006 12 1 3.2650 -1.0719 0.0981 13 6 1.9344 -2.0090 -1.3135 14 8 0.5537 -2.3695 -1.3886 15 6 1.7341 -2.1168 1.1559 16 6 1.3657 -1.5197 2.3468 17 6 0.9365 -2.2972 3.4061 18 6 0.8843 -3.6726 3.2773 19 6 1.2576 -4.2701 2.0880 20 6 1.6828 -3.4922 1.0273 21 1 -0.3634 0.4898 -0.9035 22 1 -0.3633 -1.0273 0.0274 23 1 -0.3634 0.5374 0.8759 24 1 -0.3361 3.2368 -0.1068 25 1 2.1870 -1.3610 -2.1528 26 1 2.5477 -2.9092 -1.3522 27 1 0.3143 -2.8430 -2.1971 28 1 1.4104 -0.4454 2.4488 29 1 0.6445 -1.8304 4.3352 30 1 0.5515 -4.2803 4.1058 31 1 1.2172 -5.3446 1.9875 32 1 1.9744 -3.9590 0.0981 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609123106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:46 Heat of formation + Delta-G solvation = -6.842395 kcal Electronic energy + Delta-G solvation = -15403.832716 eV Core-core repulsion = 12943.901236 eV Total energy + Delta-G solvation = -2459.931480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43404 -38.06464 -36.56869 -33.87798 -31.84831 -31.30179 -29.02988 -27.87372 -25.10636 -23.45345 -22.97619 -20.80130 -19.03114 -18.08009 -17.83613 -16.83386 -15.87270 -15.80433 -15.43586 -15.23647 -14.57588 -14.31476 -13.97796 -13.71444 -13.58528 -13.05486 -12.94254 -12.69317 -12.38285 -12.16911 -11.95882 -11.81893 -11.58021 -11.49651 -10.70362 -10.59115 -9.62571 -9.42763 -8.89429 -7.70903 -5.15102 0.65491 0.69038 1.45565 1.46304 1.56606 2.51013 3.06886 3.34382 3.60249 3.74720 4.07831 4.22265 4.30253 4.40394 4.51298 4.58991 4.80230 4.87609 4.88341 5.05024 5.20512 5.31034 5.34368 5.62585 5.66862 5.74714 5.78867 5.90716 6.01417 6.31174 6.33941 7.12385 7.20244 7.94064 8.35583 9.26111 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.009257 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.297798 B = 3024.090423 C = 3374.816144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.214 3.786 2 N -0.607 5.607 3 C -0.254 4.254 4 H 0.081 0.919 5 C -0.064 4.064 6 N -0.945 5.945 7 Si 0.971 3.029 8 H -0.264 1.264 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.198 3.802 12 H 0.082 0.918 13 C 0.076 3.924 14 O -0.572 6.572 15 C -0.090 4.090 16 C -0.120 4.120 17 C -0.138 4.138 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.110 4.110 21 H -0.004 1.004 22 H 0.026 0.974 23 H -0.001 1.001 24 H 0.241 0.759 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.382 0.618 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -13.740 1.190 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.329 5.329 3 C -0.384 4.384 4 H 0.098 0.902 5 C -0.257 4.257 6 N -0.594 5.594 7 Si 0.800 3.200 8 H -0.189 1.189 9 H -0.221 1.221 10 H -0.224 1.224 11 C 0.091 3.909 12 H 0.100 0.900 13 C -0.004 4.004 14 O -0.379 6.379 15 C -0.091 4.091 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.128 4.128 21 H 0.015 0.985 22 H 0.044 0.956 23 H 0.018 0.982 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.469 -13.289 1.754 13.846 hybrid contribution 0.126 1.329 -0.669 1.493 sum 3.595 -11.960 1.085 12.536 Atomic orbital electron populations 1.20359 0.81893 0.93739 0.97038 1.44151 1.02333 1.00513 1.85897 1.19805 0.91553 0.84934 1.42096 0.90154 1.25654 0.96496 1.00987 1.02582 1.70523 1.06692 1.24678 1.57556 0.85122 0.78384 0.79841 0.76653 1.18876 1.22105 1.22359 1.19665 0.95374 0.84613 0.91247 0.90002 1.22659 0.82979 0.97451 0.97292 1.86650 1.26117 1.79415 1.45701 1.20588 0.98755 0.94824 0.94973 1.21030 0.99579 0.99179 0.94079 1.21296 1.00830 0.94976 0.98541 1.21368 1.00633 0.94066 0.98844 1.21425 0.99348 1.00778 0.92974 1.21197 0.99906 0.92208 0.99477 0.98532 0.95553 0.98224 0.94889 0.94973 0.90939 0.77017 0.89318 0.85795 0.83751 0.83370 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 11.79 7.13 127.77 0.91 12.71 16 2 N -0.61 -31.42 2.02 -706.98 -1.43 -32.85 16 3 C -0.25 -14.25 9.81 84.03 0.82 -13.42 16 4 H 0.08 4.28 7.67 -2.91 -0.02 4.26 16 5 C -0.06 -3.72 5.44 84.86 0.46 -3.26 16 6 N -0.94 -58.37 9.48 21.65 0.21 -58.16 16 7 Si 0.97 46.50 29.56 68.60 2.03 48.53 16 8 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 9 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 11 C 0.20 8.16 3.03 44.25 0.13 8.30 16 12 H 0.08 3.29 7.78 -2.38 -0.02 3.27 16 13 C 0.08 2.53 6.08 71.98 0.44 2.97 16 14 O -0.57 -19.28 9.97 -148.98 -1.48 -20.76 16 15 C -0.09 -3.43 4.36 -19.87 -0.09 -3.51 16 16 C -0.12 -4.93 8.67 22.27 0.19 -4.74 16 17 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 18 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 19 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 20 C -0.11 -3.34 8.60 22.27 0.19 -3.15 16 21 H 0.00 -0.24 7.10 -2.39 -0.02 -0.25 16 22 H 0.03 1.35 5.61 -2.39 -0.01 1.34 16 23 H 0.00 -0.05 7.00 -2.39 -0.02 -0.06 16 24 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.82 6.87 -2.39 -0.02 1.81 16 27 H 0.38 8.74 9.12 -74.05 -0.68 8.07 16 28 H 0.09 4.33 7.50 -2.91 -0.02 4.30 16 29 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.46 6.15 -2.91 -0.02 3.44 16 Total: -1.00 -69.45 261.04 3.50 -65.95 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.44 Total: 12.35 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 3.74 Total: -15.05 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -1.22 Total: -91.01 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.48 Total: -20.76 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -69.45 3.50 -65.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609123106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.105 kcal (2) G-P(sol) polarization free energy of solvation -69.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds