Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99956 * 2 1 4 4 H 1.08002 * 119.99800 * 201.07350 * 3 2 1 5 5 C 1.38808 * 119.99913 * 21.06366 * 3 2 1 6 6 N 1.31620 * 120.00065 * 14.34767 * 5 3 2 7 7 Si 1.86805 * 120.00022 * 194.34873 * 5 3 2 8 8 H 1.48505 * 109.47005 * 94.97070 * 7 5 3 9 9 H 1.48497 * 109.46979 * 214.96872 * 7 5 3 10 10 H 1.48501 * 109.46683 * 334.97131 * 7 5 3 11 11 C 1.46504 * 120.00163 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.46728 * 177.44434 * 11 2 1 13 13 C 1.52995 * 109.47030 * 297.44449 * 11 2 1 14 14 O 1.42905 * 109.46850 * 65.00336 * 13 11 2 15 15 C 1.50693 * 109.46780 * 57.44659 * 11 2 1 16 16 C 1.38237 * 120.00131 * 212.22281 * 15 11 2 17 17 C 1.38233 * 119.99872 * 179.78626 * 16 15 11 18 18 C 1.38234 * 120.00387 * 0.44581 * 17 16 15 19 19 C 1.38227 * 119.99838 * 359.81139 * 18 17 16 20 20 C 1.38236 * 120.00083 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.46734 * 274.76857 * 1 2 3 22 22 H 1.08997 * 109.46997 * 34.77008 * 1 2 3 23 23 H 1.09001 * 109.46770 * 154.77230 * 1 2 3 24 24 H 0.97003 * 119.99965 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.47080 * 184.99468 * 13 11 2 26 26 H 1.08999 * 109.47533 * 305.00275 * 13 11 2 27 27 H 0.96705 * 113.99688 * 179.97438 * 14 13 11 28 28 H 1.08001 * 119.99561 * 0.02562 * 16 15 11 29 29 H 1.08005 * 119.99582 * 180.27770 * 17 16 15 30 30 H 1.08005 * 119.99969 * 179.83011 * 18 17 16 31 31 H 1.08003 * 120.00313 * 180.02562 * 19 18 17 32 32 H 1.08005 * 120.00010 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1756 1.2172 -0.3363 5 6 1.5252 2.3479 0.4320 6 7 0.3927 2.2774 1.0989 7 14 2.2922 4.0117 0.0670 8 1 1.6936 4.5716 -1.1714 9 1 2.0358 4.9345 1.2018 10 1 3.7566 3.8513 -0.1197 11 6 2.1976 -1.2687 0.0006 12 1 3.2683 -1.0700 -0.0453 13 6 1.8768 -2.0422 1.2810 14 8 0.4943 -2.4039 1.2853 15 6 1.7866 -2.0865 -1.1966 16 6 1.7669 -3.4664 -1.1173 17 6 1.3857 -4.2164 -2.2142 18 6 1.0331 -3.5868 -3.3932 19 6 1.0579 -2.2071 -3.4742 20 6 1.4348 -1.4569 -2.3760 21 1 -0.3633 0.0854 1.0241 22 1 -0.3633 0.8442 -0.5861 23 1 -0.3633 -0.9297 -0.4380 24 1 -0.0436 3.0894 1.4012 25 1 2.4883 -2.9436 1.3238 26 1 2.0913 -1.4162 2.1471 27 1 0.2196 -2.8985 2.0696 28 1 2.0457 -3.9584 -0.1972 29 1 1.3660 -5.2944 -2.1508 30 1 0.7378 -4.1729 -4.2510 31 1 0.7819 -1.7151 -4.3952 32 1 1.4546 -0.3789 -2.4394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609123113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = 5.976116 kcal Electronic energy + Delta-G solvation = -15386.548482 eV Core-core repulsion = 12927.172854 eV Total energy + Delta-G solvation = -2459.375627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.00717 -36.54017 -34.77348 -32.08482 -30.42611 -29.71723 -27.49853 -25.69966 -23.48238 -21.88647 -21.56776 -19.22593 -17.16073 -16.54182 -16.22066 -15.01306 -14.47906 -14.23415 -13.98828 -13.46671 -13.04867 -12.77395 -12.47286 -12.14912 -11.80046 -11.52918 -10.99285 -10.80642 -10.76179 -10.40315 -10.36721 -10.03350 -9.86976 -9.79251 -9.21175 -8.50071 -8.32020 -8.01764 -6.72274 -5.66853 -3.12451 1.96799 2.01066 3.40003 3.46581 3.47847 4.37858 4.54206 5.00131 5.33652 5.41261 5.44087 5.53329 5.61968 5.70736 5.96581 6.04327 6.17572 6.22204 6.43560 6.56463 6.65975 6.68260 7.01593 7.11189 7.18885 7.39614 7.58130 7.64075 7.84692 8.02144 8.29717 8.44040 9.29576 9.92870 10.43589 11.36699 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.009375 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.425150 B = 2985.929884 C = 3408.427667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.586 5.586 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.901 5.901 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.207 3.793 12 H 0.085 0.915 13 C 0.066 3.934 14 O -0.553 6.553 15 C -0.068 4.068 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.092 4.092 21 H 0.028 0.972 22 H 0.030 0.970 23 H 0.008 0.992 24 H 0.251 0.749 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.359 0.641 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -10.642 -3.490 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.098 3.902 12 H 0.102 0.898 13 C -0.014 4.014 14 O -0.355 6.355 15 C -0.070 4.070 16 C -0.130 4.130 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.110 4.110 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.203 0.797 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.973 -10.140 -3.995 11.076 hybrid contribution 0.280 0.650 0.488 0.860 sum 2.254 -9.490 -3.507 10.365 Atomic orbital electron populations 1.20626 0.81606 0.95159 0.99113 1.43915 1.02273 0.99239 1.85253 1.19282 0.97380 0.85198 1.37128 0.91374 1.24976 0.97846 0.98271 0.98456 1.70136 1.18765 1.26660 1.39034 0.86272 0.78665 0.84372 0.77437 1.21590 1.21866 1.20487 1.19429 0.96000 0.86114 0.88628 0.89767 1.22898 0.82094 0.96138 1.00283 1.86701 1.25976 1.77393 1.45471 1.20731 0.96602 0.93472 0.96169 1.20976 1.00512 0.93719 0.97752 1.20958 1.01531 0.98909 0.93754 1.20946 1.02331 0.94740 0.97614 1.21102 1.01323 0.93947 0.98583 1.21209 0.96952 1.00929 0.91939 0.95412 0.95116 0.97319 0.93878 0.95497 0.93561 0.79693 0.86870 0.87243 0.87295 0.87013 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.67 6.83 59.85 0.41 5.08 16 2 N -0.59 -14.74 1.94 -174.82 -0.34 -15.08 16 3 C -0.26 -7.11 9.61 -15.06 -0.14 -7.26 16 4 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 5 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 6 N -0.90 -26.62 10.67 55.49 0.59 -26.02 16 7 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.21 4.34 3.04 -69.09 -0.21 4.13 16 12 H 0.08 1.73 7.85 -51.93 -0.41 1.32 16 13 C 0.07 1.21 6.08 37.16 0.23 1.44 16 14 O -0.55 -10.19 10.47 -35.23 -0.37 -10.56 16 15 C -0.07 -1.31 4.30 -104.63 -0.45 -1.76 16 16 C -0.11 -1.87 8.65 -39.58 -0.34 -2.21 16 17 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 18 C -0.14 -2.11 10.05 -39.59 -0.40 -2.50 16 19 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 20 C -0.09 -1.80 8.48 -39.58 -0.34 -2.14 16 21 H 0.03 0.79 7.38 -51.93 -0.38 0.40 16 22 H 0.03 0.85 7.22 -51.93 -0.37 0.48 16 23 H 0.01 0.21 6.24 -51.93 -0.32 -0.12 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.41 6.84 -51.93 -0.36 0.06 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.36 4.86 9.12 45.56 0.42 5.28 16 28 H 0.11 1.72 6.22 -52.49 -0.33 1.39 16 29 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.13 2.82 7.45 -52.48 -0.39 2.43 16 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -30.91 262.93 -6.69 -37.60 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.38 Total: 3.46 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.13 Total: -10.26 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.25 Total: -41.10 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.37 Total: -10.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.91 -6.69 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609123113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.580 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds