Wall clock time and date at job start Sun Mar 29 2020 22:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99956 * 2 1 4 4 H 1.08002 * 119.99800 * 201.07350 * 3 2 1 5 5 C 1.38808 * 119.99913 * 21.06366 * 3 2 1 6 6 N 1.31620 * 120.00065 * 14.34767 * 5 3 2 7 7 Si 1.86805 * 120.00022 * 194.34873 * 5 3 2 8 8 H 1.48505 * 109.47005 * 94.97070 * 7 5 3 9 9 H 1.48497 * 109.46979 * 214.96872 * 7 5 3 10 10 H 1.48501 * 109.46683 * 334.97131 * 7 5 3 11 11 C 1.46504 * 120.00163 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.46728 * 177.44434 * 11 2 1 13 13 C 1.52995 * 109.47030 * 297.44449 * 11 2 1 14 14 O 1.42905 * 109.46850 * 65.00336 * 13 11 2 15 15 C 1.50693 * 109.46780 * 57.44659 * 11 2 1 16 16 C 1.38237 * 120.00131 * 212.22281 * 15 11 2 17 17 C 1.38233 * 119.99872 * 179.78626 * 16 15 11 18 18 C 1.38234 * 120.00387 * 0.44581 * 17 16 15 19 19 C 1.38227 * 119.99838 * 359.81139 * 18 17 16 20 20 C 1.38236 * 120.00083 * 359.97438 * 19 18 17 21 21 H 1.09000 * 109.46734 * 274.76857 * 1 2 3 22 22 H 1.08997 * 109.46997 * 34.77008 * 1 2 3 23 23 H 1.09001 * 109.46770 * 154.77230 * 1 2 3 24 24 H 0.97003 * 119.99965 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.47080 * 184.99468 * 13 11 2 26 26 H 1.08999 * 109.47533 * 305.00275 * 13 11 2 27 27 H 0.96705 * 113.99688 * 179.97438 * 14 13 11 28 28 H 1.08001 * 119.99561 * 0.02562 * 16 15 11 29 29 H 1.08005 * 119.99582 * 180.27770 * 17 16 15 30 30 H 1.08005 * 119.99969 * 179.83011 * 18 17 16 31 31 H 1.08003 * 120.00313 * 180.02562 * 19 18 17 32 32 H 1.08005 * 120.00010 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1756 1.2172 -0.3363 5 6 1.5252 2.3479 0.4320 6 7 0.3927 2.2774 1.0989 7 14 2.2922 4.0117 0.0670 8 1 1.6936 4.5716 -1.1714 9 1 2.0358 4.9345 1.2018 10 1 3.7566 3.8513 -0.1197 11 6 2.1976 -1.2687 0.0006 12 1 3.2683 -1.0700 -0.0453 13 6 1.8768 -2.0422 1.2810 14 8 0.4943 -2.4039 1.2853 15 6 1.7866 -2.0865 -1.1966 16 6 1.7669 -3.4664 -1.1173 17 6 1.3857 -4.2164 -2.2142 18 6 1.0331 -3.5868 -3.3932 19 6 1.0579 -2.2071 -3.4742 20 6 1.4348 -1.4569 -2.3760 21 1 -0.3633 0.0854 1.0241 22 1 -0.3633 0.8442 -0.5861 23 1 -0.3633 -0.9297 -0.4380 24 1 -0.0436 3.0894 1.4012 25 1 2.4883 -2.9436 1.3238 26 1 2.0913 -1.4162 2.1471 27 1 0.2196 -2.8985 2.0696 28 1 2.0457 -3.9584 -0.1972 29 1 1.3660 -5.2944 -2.1508 30 1 0.7378 -4.1729 -4.2510 31 1 0.7819 -1.7151 -4.3952 32 1 1.4546 -0.3789 -2.4394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609123113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:48 Heat of formation + Delta-G solvation = -14.165365 kcal Electronic energy + Delta-G solvation = -15387.421882 eV Core-core repulsion = 12927.172854 eV Total energy + Delta-G solvation = -2460.249027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42652 -38.04940 -36.53904 -33.87343 -31.90010 -31.32454 -29.06147 -27.82261 -25.17389 -23.47274 -22.97592 -20.80395 -18.97732 -18.09397 -17.76690 -16.86072 -15.90643 -15.82113 -15.44854 -15.25998 -14.60265 -14.33159 -13.98918 -13.70371 -13.62193 -13.07211 -12.80408 -12.72925 -12.46069 -12.25479 -11.98266 -11.92362 -11.66046 -11.48509 -10.70438 -10.60701 -9.62292 -9.39086 -8.78148 -7.80507 -5.27180 0.65965 0.69344 1.45063 1.46847 1.55681 2.50471 3.07319 3.30974 3.59637 3.73999 4.07848 4.22386 4.30713 4.40131 4.51983 4.57911 4.80695 4.87745 4.89365 5.06600 5.11093 5.29621 5.34508 5.40789 5.64816 5.73933 5.77454 5.83142 6.00709 6.31621 6.34107 7.09655 7.16725 7.89581 8.36226 9.22622 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.009375 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.425150 B = 2985.929884 C = 3408.427667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.213 3.787 2 N -0.597 5.597 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.295 1.295 10 H -0.266 1.266 11 C 0.197 3.803 12 H 0.081 0.919 13 C 0.077 3.923 14 O -0.571 6.571 15 C -0.087 4.087 16 C -0.112 4.112 17 C -0.127 4.127 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.121 4.121 21 H -0.002 1.002 22 H -0.002 1.002 23 H 0.018 0.982 24 H 0.246 0.754 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.382 0.618 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -12.984 -4.365 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.319 5.319 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.249 4.249 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.218 1.218 9 H -0.222 1.222 10 H -0.190 1.190 11 C 0.090 3.910 12 H 0.099 0.901 13 C -0.003 4.003 14 O -0.377 6.377 15 C -0.089 4.089 16 C -0.130 4.130 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.139 4.139 21 H 0.017 0.983 22 H 0.016 0.984 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.229 0.771 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.724 -12.527 -4.869 13.713 hybrid contribution 0.066 1.232 0.691 1.414 sum 2.790 -11.295 -4.178 12.362 Atomic orbital electron populations 1.20113 0.82537 0.94021 0.96539 1.43998 1.01910 1.00510 1.85495 1.19623 0.97532 0.86393 1.35818 0.91016 1.25739 0.98608 1.01635 0.98921 1.70296 1.20342 1.27020 1.40684 0.85244 0.78481 0.80015 0.76687 1.21765 1.22188 1.19021 1.19660 0.95459 0.84967 0.90926 0.90091 1.22627 0.82912 0.97186 0.97552 1.86629 1.25989 1.77998 1.47129 1.20544 0.98561 0.94652 0.95154 1.21172 1.00136 0.92444 0.99294 1.21408 0.99506 1.00759 0.92840 1.21372 1.00627 0.94041 0.98931 1.21316 1.00849 0.95031 0.98266 1.21067 0.99633 0.99553 0.93674 0.98338 0.98359 0.96351 0.94482 0.91178 0.95756 0.77084 0.84983 0.83533 0.83753 0.85433 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 11.51 6.83 127.77 0.87 12.38 16 2 N -0.60 -30.90 1.94 -706.99 -1.37 -32.27 16 3 C -0.26 -14.77 9.61 84.03 0.81 -13.96 16 4 H 0.07 3.87 7.80 -2.91 -0.02 3.85 16 5 C -0.05 -3.10 5.07 84.86 0.43 -2.67 16 6 N -0.94 -57.32 10.67 21.65 0.23 -57.09 16 7 Si 0.97 46.14 29.58 68.60 2.03 48.16 16 8 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 C 0.20 8.25 3.04 44.24 0.13 8.38 16 12 H 0.08 3.34 7.85 -2.39 -0.02 3.32 16 13 C 0.08 2.73 6.08 71.98 0.44 3.16 16 14 O -0.57 -20.26 10.47 -148.98 -1.56 -21.82 16 15 C -0.09 -3.30 4.30 -19.87 -0.09 -3.39 16 16 C -0.11 -3.42 8.65 22.27 0.19 -3.23 16 17 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 18 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 19 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 20 C -0.12 -4.74 8.48 22.27 0.19 -4.56 16 21 H 0.00 -0.10 7.38 -2.39 -0.02 -0.12 16 22 H 0.00 -0.14 7.22 -2.39 -0.02 -0.16 16 23 H 0.02 0.93 6.24 -2.39 -0.01 0.91 16 24 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.07 1.90 6.84 -2.39 -0.02 1.89 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.38 9.56 9.12 -74.05 -0.68 8.88 16 28 H 0.13 3.45 6.22 -2.91 -0.02 3.44 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 32 H 0.10 4.34 7.45 -2.91 -0.02 4.32 16 Total: -1.00 -68.38 262.93 3.42 -64.97 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.44 Total: 12.41 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.65 Total: -14.36 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.14 Total: -89.36 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.56 Total: -21.82 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -68.38 3.42 -64.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609123113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.800 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds