Wall clock time and date at job start Sun Mar 29 2020 22:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47500 * 270.00215 * 3 2 1 5 5 H 1.48504 * 109.47180 * 29.99990 * 3 2 1 6 6 H 1.48500 * 109.47337 * 149.99717 * 3 2 1 7 7 C 1.38810 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00221 * 197.35071 * 7 2 1 9 9 N 1.36931 * 120.00159 * 17.35688 * 7 2 1 10 10 C 1.46927 * 120.63395 * 27.69363 * 9 7 2 11 11 C 1.53186 * 108.77757 * 126.36920 * 10 9 7 12 12 C 1.53042 * 109.31159 * 54.64062 * 11 10 9 13 13 C 1.53044 * 109.53688 * 298.63200 * 12 11 10 14 14 H 1.08998 * 109.52251 * 301.39739 * 13 12 11 15 15 N 1.46498 * 109.49669 * 181.31304 * 13 12 11 16 16 C 1.36882 * 126.39448 * 120.18849 * 15 13 12 17 17 C 1.34665 * 106.81807 * 180.02562 * 16 15 13 18 18 N 1.34126 * 108.02154 * 359.97438 * 17 16 15 19 19 C 1.30503 * 109.25413 * 0.02562 * 18 17 16 20 20 C 1.46927 * 120.63035 * 207.67609 * 9 7 2 21 21 H 0.96993 * 119.99958 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.58582 * 246.16414 * 10 9 7 23 23 H 1.09007 * 109.58655 * 6.58451 * 10 9 7 24 24 H 1.09008 * 109.49955 * 174.58636 * 11 10 9 25 25 H 1.08995 * 109.50152 * 294.68598 * 11 10 9 26 26 H 1.08997 * 109.46467 * 178.61509 * 12 11 10 27 27 H 1.08999 * 109.46371 * 58.65392 * 12 11 10 28 28 H 1.08007 * 126.59249 * 359.97438 * 16 15 13 29 29 H 1.08007 * 125.98731 * 180.02562 * 17 16 15 30 30 H 1.07998 * 125.64455 * 179.97438 * 19 18 17 31 31 H 1.09006 * 109.59031 * 113.84429 * 20 9 7 32 32 H 1.08998 * 109.70757 * 353.48350 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0535 -1.2233 0.2795 9 7 1.3725 -2.3612 -0.3527 10 6 0.2281 -2.3351 -1.2739 11 6 0.5016 -3.3052 -2.4275 12 6 0.8198 -4.6902 -1.8596 13 6 2.0753 -4.6100 -0.9880 14 1 2.9095 -4.2401 -1.5842 15 7 2.3970 -5.9421 -0.4702 16 6 3.5563 -6.6380 -0.6830 17 6 3.4330 -7.8094 -0.0303 18 7 2.2314 -7.8280 0.5654 19 6 1.6052 -6.7128 0.3060 20 6 1.8196 -3.6546 0.1820 21 1 -0.4850 0.8400 -0.0004 22 1 -0.6741 -2.6418 -0.7446 23 1 0.0986 -1.3268 -1.6673 24 1 -0.3790 -3.3677 -3.0669 25 1 1.3503 -2.9473 -3.0104 26 1 0.9907 -5.3883 -2.6790 27 1 -0.0193 -5.0370 -1.2565 28 1 4.4063 -6.3109 -1.2637 29 1 4.1725 -8.5957 0.0077 30 1 0.6173 -6.4500 0.6544 31 1 1.0471 -4.0690 0.8299 32 1 2.7395 -3.5190 0.7507 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609157655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:30 Heat of formation + Delta-G solvation = 79.331426 kcal Electronic energy + Delta-G solvation = -15194.264302 eV Core-core repulsion = 12770.362351 eV Total energy + Delta-G solvation = -2423.901951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76881 -37.72541 -34.01253 -32.17109 -30.67978 -29.37344 -28.30322 -25.46703 -22.99858 -22.28040 -21.15010 -20.57846 -19.06256 -17.24972 -16.47008 -15.05011 -14.79525 -14.40501 -14.02466 -13.71391 -13.47503 -13.30947 -13.07972 -12.67801 -12.58132 -11.95106 -11.25835 -11.01585 -10.89652 -10.50375 -10.43606 -10.15101 -9.99210 -9.82651 -9.67542 -9.20447 -8.60464 -8.23251 -6.89180 -5.94429 -3.39018 2.39395 3.12538 3.29614 3.37299 3.38237 3.45083 4.37696 4.92025 4.99585 5.12238 5.20456 5.28647 5.39360 5.49757 5.60942 5.71498 5.90586 5.93507 6.06486 6.29219 6.37057 6.44726 6.52488 6.61147 6.72355 7.03070 7.18828 7.48449 7.52254 7.66272 8.27228 8.36599 9.03731 9.65045 10.19894 11.14257 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046626 B = 0.007363 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.376785 B = 3801.848030 C = 4065.982299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.585 5.585 10 C 0.165 3.835 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.111 3.889 14 H 0.096 0.904 15 N -0.441 5.441 16 C -0.059 4.059 17 C -0.041 4.041 18 N -0.506 5.506 19 C 0.184 3.816 20 C 0.144 3.856 21 H 0.256 0.744 22 H 0.022 0.978 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.198 0.802 31 H 0.027 0.973 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -8.180 -4.076 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.308 5.308 10 C 0.040 3.960 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.007 3.993 14 H 0.114 0.886 15 N -0.122 5.122 16 C -0.194 4.194 17 C -0.190 4.190 18 N -0.225 5.225 19 C -0.099 4.099 20 C 0.016 3.984 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.215 0.785 31 H 0.045 0.955 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.673 -8.484 -3.630 9.607 hybrid contribution 0.769 1.512 -0.531 1.778 sum 3.442 -6.971 -4.161 8.818 Atomic orbital electron populations 1.70035 1.05321 1.25871 1.53051 1.25053 0.95322 0.98565 1.00269 0.86238 0.79145 0.83271 0.77807 1.21249 1.21582 1.20321 1.19187 0.92852 0.84526 1.42588 0.91426 1.44017 1.35712 1.00672 1.50372 1.20904 0.88526 0.98773 0.87805 1.22207 1.00772 0.94779 1.00192 1.21766 0.96357 0.98810 0.98387 1.22417 0.99254 0.79117 0.98511 0.88602 1.45880 1.13563 1.15478 1.37301 1.22721 0.92502 0.95511 1.08621 1.22188 0.96504 0.98025 1.02280 1.70264 1.06891 1.21132 1.24223 1.24814 0.99207 0.88220 0.97638 1.21123 0.98739 0.86984 0.91520 0.93371 0.95938 0.88974 0.92259 0.92324 0.92840 0.91765 0.81492 0.81939 0.78488 0.95534 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 11.19 55.49 0.62 -24.43 16 2 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 3 Si 0.91 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -13.81 2.99 -172.31 -0.52 -14.32 16 10 C 0.17 3.67 5.31 -3.71 -0.02 3.65 16 11 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 12 C -0.11 -1.80 5.20 -26.69 -0.14 -1.94 16 13 C 0.11 1.83 3.01 -67.81 -0.20 1.63 16 14 H 0.10 1.59 8.08 -51.93 -0.42 1.17 16 15 N -0.44 -6.90 2.62 -111.33 -0.29 -7.19 16 16 C -0.06 -0.84 11.54 -16.56 -0.19 -1.04 16 17 C -0.04 -0.61 11.87 -17.81 -0.21 -0.83 16 18 N -0.51 -8.61 11.25 -14.67 -0.17 -8.77 16 19 C 0.18 2.94 11.48 -90.38 -1.04 1.90 16 20 C 0.14 2.87 5.91 -3.71 -0.02 2.85 16 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 24 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 28 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 30 H 0.20 2.75 8.06 -52.49 -0.42 2.33 16 31 H 0.03 0.54 7.81 -51.93 -0.41 0.13 16 32 H 0.06 1.24 7.94 -51.93 -0.41 0.83 16 LS Contribution 264.65 15.07 3.99 3.99 Total: -1.00 -28.99 264.65 -8.08 -37.07 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.47 Total: 1.06 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.22 Total: -3.29 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.35 Total: -54.72 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.99 -8.08 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609157655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.402 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds