Wall clock time and date at job start Sun Mar 29 2020 22:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47500 * 270.00215 * 3 2 1 5 5 H 1.48504 * 109.47180 * 29.99990 * 3 2 1 6 6 H 1.48500 * 109.47337 * 149.99717 * 3 2 1 7 7 C 1.38810 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00221 * 197.35071 * 7 2 1 9 9 N 1.36931 * 120.00159 * 17.35688 * 7 2 1 10 10 C 1.46927 * 120.63395 * 27.69363 * 9 7 2 11 11 C 1.53186 * 108.77757 * 126.36920 * 10 9 7 12 12 C 1.53042 * 109.31159 * 54.64062 * 11 10 9 13 13 C 1.53044 * 109.53688 * 298.63200 * 12 11 10 14 14 H 1.08998 * 109.52251 * 301.39739 * 13 12 11 15 15 N 1.46498 * 109.49669 * 181.31304 * 13 12 11 16 16 C 1.36882 * 126.39448 * 120.18849 * 15 13 12 17 17 C 1.34665 * 106.81807 * 180.02562 * 16 15 13 18 18 N 1.34126 * 108.02154 * 359.97438 * 17 16 15 19 19 C 1.30503 * 109.25413 * 0.02562 * 18 17 16 20 20 C 1.46927 * 120.63035 * 207.67609 * 9 7 2 21 21 H 0.96993 * 119.99958 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.58582 * 246.16414 * 10 9 7 23 23 H 1.09007 * 109.58655 * 6.58451 * 10 9 7 24 24 H 1.09008 * 109.49955 * 174.58636 * 11 10 9 25 25 H 1.08995 * 109.50152 * 294.68598 * 11 10 9 26 26 H 1.08997 * 109.46467 * 178.61509 * 12 11 10 27 27 H 1.08999 * 109.46371 * 58.65392 * 12 11 10 28 28 H 1.08007 * 126.59249 * 359.97438 * 16 15 13 29 29 H 1.08007 * 125.98731 * 180.02562 * 17 16 15 30 30 H 1.07998 * 125.64455 * 179.97438 * 19 18 17 31 31 H 1.09006 * 109.59031 * 113.84429 * 20 9 7 32 32 H 1.08998 * 109.70757 * 353.48350 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0535 -1.2233 0.2795 9 7 1.3725 -2.3612 -0.3527 10 6 0.2281 -2.3351 -1.2739 11 6 0.5016 -3.3052 -2.4275 12 6 0.8198 -4.6902 -1.8596 13 6 2.0753 -4.6100 -0.9880 14 1 2.9095 -4.2401 -1.5842 15 7 2.3970 -5.9421 -0.4702 16 6 3.5563 -6.6380 -0.6830 17 6 3.4330 -7.8094 -0.0303 18 7 2.2314 -7.8280 0.5654 19 6 1.6052 -6.7128 0.3060 20 6 1.8196 -3.6546 0.1820 21 1 -0.4850 0.8400 -0.0004 22 1 -0.6741 -2.6418 -0.7446 23 1 0.0986 -1.3268 -1.6673 24 1 -0.3790 -3.3677 -3.0669 25 1 1.3503 -2.9473 -3.0104 26 1 0.9907 -5.3883 -2.6790 27 1 -0.0193 -5.0370 -1.2565 28 1 4.4063 -6.3109 -1.2637 29 1 4.1725 -8.5957 0.0077 30 1 0.6173 -6.4500 0.6544 31 1 1.0471 -4.0690 0.8299 32 1 2.7395 -3.5190 0.7507 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609157655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:29 Heat of formation + Delta-G solvation = 63.810478 kcal Electronic energy + Delta-G solvation = -15194.937341 eV Core-core repulsion = 12770.362351 eV Total energy + Delta-G solvation = -2424.574990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.96519 -39.27561 -35.64823 -33.71313 -32.43906 -30.64773 -29.66124 -27.31442 -24.43784 -23.92904 -22.42280 -21.86599 -20.51144 -18.84675 -18.02614 -16.86654 -16.15090 -15.84843 -15.55829 -15.21203 -14.79331 -14.66786 -14.42307 -14.18988 -14.12548 -13.41698 -13.06716 -12.75576 -12.54125 -12.20780 -12.01062 -11.82920 -11.67860 -11.44693 -10.90446 -10.66497 -10.42742 -9.38062 -8.79419 -7.94366 -5.41256 1.22328 1.46505 1.47848 1.56299 1.88369 2.27440 2.48918 3.21648 3.57887 3.66161 3.86757 3.89478 4.02068 4.11613 4.29225 4.49319 4.59770 4.66134 4.76191 4.84931 4.92098 5.00110 5.05959 5.12415 5.46404 5.50332 5.60002 5.70829 5.91161 6.27041 6.35904 7.07561 7.19220 7.74795 8.25414 9.12208 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046626 B = 0.007363 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.376785 B = 3801.848030 C = 4065.982299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.170 3.830 11 C -0.126 4.126 12 C -0.107 4.107 13 C 0.129 3.871 14 H 0.102 0.898 15 N -0.445 5.445 16 C -0.057 4.057 17 C -0.053 4.053 18 N -0.533 5.533 19 C 0.172 3.828 20 C 0.146 3.854 21 H 0.252 0.748 22 H 0.002 0.998 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.197 0.803 29 H 0.188 0.812 30 H 0.209 0.791 31 H 0.021 0.979 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -9.117 -5.083 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.401 4.401 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.045 3.955 11 C -0.166 4.166 12 C -0.145 4.145 13 C 0.025 3.975 14 H 0.120 0.880 15 N -0.126 5.126 16 C -0.190 4.190 17 C -0.200 4.200 18 N -0.252 5.252 19 C -0.111 4.111 20 C 0.019 3.981 21 H 0.062 0.938 22 H 0.020 0.980 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.214 0.786 29 H 0.205 0.795 30 H 0.225 0.775 31 H 0.039 0.961 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.881 -9.463 -4.640 11.231 hybrid contribution 0.418 1.732 -0.158 1.789 sum 4.299 -7.731 -4.798 10.063 Atomic orbital electron populations 1.70176 1.06634 1.26156 1.54619 1.25769 0.96021 1.01457 1.00673 0.85273 0.78050 0.79407 0.77735 1.20822 1.22172 1.19495 1.19483 0.93038 0.85790 1.41767 0.91514 1.44220 1.35907 1.01308 1.51179 1.20749 0.87549 0.98319 0.88929 1.22010 1.01864 0.94366 0.98320 1.21694 0.95903 0.98003 0.98897 1.22026 0.99962 0.78810 0.96723 0.88005 1.45835 1.14171 1.15038 1.37606 1.23244 0.92546 0.95058 1.08193 1.22688 0.96337 0.99070 1.01934 1.70267 1.08103 1.21743 1.25070 1.25096 0.99825 0.88251 0.97887 1.21134 0.97828 0.86275 0.92857 0.93849 0.97993 0.92284 0.90017 0.92154 0.90403 0.91641 0.78604 0.79493 0.77485 0.96111 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 11.19 21.65 0.24 -52.79 16 2 C -0.04 -2.31 4.91 84.86 0.42 -1.89 16 3 Si 0.97 43.26 29.59 68.60 2.03 45.29 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.27 -14.30 9.59 84.03 0.81 -13.49 16 8 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 9 N -0.60 -28.51 2.99 -699.08 -2.09 -30.60 16 10 C 0.17 7.58 5.31 86.36 0.46 8.04 16 11 C -0.13 -4.14 6.08 30.67 0.19 -3.96 16 12 C -0.11 -3.06 5.20 30.62 0.16 -2.90 16 13 C 0.13 3.97 3.01 45.07 0.14 4.11 16 14 H 0.10 3.07 8.08 -2.39 -0.02 3.05 16 15 N -0.45 -12.85 2.62 -506.13 -1.33 -14.18 16 16 C -0.06 -1.45 11.54 83.09 0.96 -0.49 16 17 C -0.05 -1.43 11.87 83.52 0.99 -0.44 16 18 N -0.53 -17.18 11.25 -200.31 -2.25 -19.44 16 19 C 0.17 5.20 11.48 180.26 2.07 7.27 16 20 C 0.15 5.72 5.91 86.36 0.51 6.23 16 21 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 22 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 23 H 0.06 3.02 6.04 -2.38 -0.01 3.01 16 24 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 27 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 28 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.21 5.56 8.06 -2.91 -0.02 5.54 16 31 H 0.02 0.84 7.81 -2.38 -0.02 0.82 16 32 H 0.05 2.05 7.94 -2.39 -0.02 2.03 16 Total: -1.00 -62.02 264.65 4.38 -57.64 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.09 Total: 11.60 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.69 Total: 2.47 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.43 Total: -117.01 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.02 4.38 -57.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609157655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.452 kcal (2) G-P(sol) polarization free energy of solvation -62.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds