Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00389 * 2 1 4 4 H 1.48495 * 109.47250 * 269.99867 * 3 2 1 5 5 H 1.48505 * 109.47013 * 149.99428 * 3 2 1 6 6 H 1.48503 * 109.46886 * 30.00188 * 3 2 1 7 7 C 1.38818 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99698 * 154.90699 * 7 2 1 9 9 N 1.36933 * 120.00073 * 334.91106 * 7 2 1 10 10 C 1.46925 * 120.63250 * 332.40159 * 9 7 2 11 11 C 1.53189 * 108.77489 * 233.58481 * 10 9 7 12 12 C 1.53043 * 109.31497 * 305.36212 * 11 10 9 13 13 C 1.53047 * 109.53579 * 61.36650 * 12 11 10 14 14 H 1.09000 * 109.49678 * 58.61433 * 13 12 11 15 15 N 1.46492 * 109.49867 * 178.68500 * 13 12 11 16 16 C 1.36887 * 126.39861 * 239.71753 * 15 13 12 17 17 C 1.34670 * 106.81894 * 179.84146 * 16 15 13 18 18 N 1.34130 * 108.01572 * 0.41749 * 17 16 15 19 19 C 1.30490 * 109.26119 * 359.73017 * 18 17 16 20 20 C 1.46931 * 120.62969 * 152.12143 * 9 7 2 21 21 H 0.97004 * 120.00436 * 174.25592 * 1 2 3 22 22 H 1.08997 * 109.58446 * 353.37125 * 10 9 7 23 23 H 1.09003 * 109.58796 * 113.65574 * 10 9 7 24 24 H 1.08997 * 109.49818 * 65.31447 * 11 10 9 25 25 H 1.09007 * 109.50031 * 185.41002 * 11 10 9 26 26 H 1.09005 * 109.46005 * 181.38240 * 12 11 10 27 27 H 1.08999 * 109.46046 * 301.36171 * 12 11 10 28 28 H 1.08000 * 126.58809 * 359.97070 * 16 15 13 29 29 H 1.07999 * 125.98812 * 180.11493 * 17 16 15 30 30 H 1.08003 * 125.65431 * 180.02562 * 19 18 17 31 31 H 1.09000 * 109.58814 * 246.20201 * 20 9 7 32 32 H 1.09000 * 109.58530 * 6.62388 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 3.5478 1.4400 0.7002 6 1 1.4477 2.6526 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0137 -1.2466 -0.3961 9 7 1.4223 -2.3319 0.5039 10 6 0.3916 -2.2384 1.5467 11 6 0.7998 -3.1284 2.7247 12 6 1.0559 -4.5503 2.2199 13 6 2.2024 -4.5348 1.2062 14 1 3.0980 -4.1285 1.6762 15 7 2.4676 -5.9004 0.7471 16 6 3.6470 -6.5842 0.8705 17 6 3.4528 -7.7984 0.3212 18 7 2.1921 -7.8511 -0.1337 19 6 1.5960 -6.7179 0.1180 20 6 1.8060 -3.6604 0.0070 21 1 -0.4851 -0.8358 -0.0841 22 1 0.3043 -1.2051 1.8825 23 1 -0.5649 -2.5745 1.1463 24 1 1.7085 -2.7349 3.1802 25 1 -0.0011 -3.1436 3.4640 26 1 1.3227 -5.1914 3.0602 27 1 0.1543 -4.9340 1.7423 28 1 4.5575 -6.2207 1.3234 29 1 4.1854 -8.5890 0.2539 30 1 0.5746 -6.4742 -0.1346 31 1 0.9631 -4.1125 -0.5156 32 1 2.6522 -3.5656 -0.6735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609157656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = 76.923266 kcal Electronic energy + Delta-G solvation = -15232.277174 eV Core-core repulsion = 12808.270797 eV Total energy + Delta-G solvation = -2424.006377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82960 -37.91050 -34.26177 -32.26842 -30.63829 -29.41319 -28.34398 -25.30546 -23.07344 -22.38284 -21.18846 -20.60779 -19.12158 -17.66029 -16.83066 -15.00235 -14.60851 -14.46976 -14.13397 -13.73735 -13.64501 -13.43259 -13.23286 -13.00217 -12.51222 -12.16190 -11.29460 -10.98600 -10.84511 -10.57956 -10.36987 -10.20209 -10.11299 -9.75271 -9.53707 -9.27804 -8.51282 -8.28519 -7.10015 -6.22803 -3.40986 2.33195 3.05690 3.39538 3.42613 3.45821 3.61206 4.47285 4.82954 4.93320 5.03088 5.10521 5.16259 5.34458 5.38157 5.51604 5.62726 5.76352 5.87131 5.93536 6.16742 6.21619 6.27147 6.41189 6.42862 6.63628 6.87128 6.97048 7.01168 7.45161 7.84125 8.30639 8.41473 8.91640 9.66795 10.07157 11.06225 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046922 B = 0.007376 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.589660 B = 3795.318835 C = 4023.608092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.019 4.019 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.359 4.359 8 H 0.058 0.942 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.112 3.888 14 H 0.097 0.903 15 N -0.442 5.442 16 C -0.058 4.058 17 C -0.040 4.040 18 N -0.505 5.505 19 C 0.183 3.817 20 C 0.146 3.854 21 H 0.270 0.730 22 H 0.085 0.915 23 H 0.021 0.979 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.026 0.974 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -8.304 4.559 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.222 4.222 3 Si 0.896 3.104 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.487 4.487 8 H 0.076 0.924 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.154 4.154 13 C 0.008 3.992 14 H 0.115 0.885 15 N -0.123 5.123 16 C -0.193 4.193 17 C -0.189 4.189 18 N -0.224 5.224 19 C -0.100 4.100 20 C 0.019 3.981 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.186 0.814 29 H 0.181 0.819 30 H 0.215 0.785 31 H 0.043 0.957 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.364 -7.115 4.275 8.956 hybrid contribution 0.644 -1.047 0.291 1.264 sum 4.008 -8.162 4.566 10.175 Atomic orbital electron populations 1.70768 1.06647 1.30449 1.47183 1.25910 0.96458 1.01546 0.98236 0.83517 0.74681 0.75619 0.76572 1.21980 1.21788 1.21004 1.19977 0.97761 0.88160 1.42838 0.92391 1.44100 1.45963 1.00548 1.41006 1.21066 0.90331 0.99588 0.87104 1.22077 1.01410 0.94291 0.99571 1.21765 0.97421 0.98605 0.97564 1.22466 1.00248 0.78074 0.98447 0.88492 1.45865 1.10518 1.13559 1.42375 1.22734 0.91566 0.95017 1.09959 1.22200 0.94937 0.97107 1.04656 1.70260 1.07167 1.21914 1.23041 1.24803 0.98070 0.86960 1.00125 1.21209 0.98473 0.86736 0.91729 0.91916 0.89718 0.96086 0.91928 0.92018 0.92528 0.91762 0.81446 0.81853 0.78547 0.95658 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.23 12.40 55.49 0.69 -25.54 16 2 C -0.02 -0.51 4.68 -17.43 -0.08 -0.59 16 3 Si 1.07 24.29 29.99 -169.99 -5.10 19.20 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.36 -9.58 9.49 -15.06 -0.14 -9.72 16 8 H 0.06 1.56 7.94 -52.49 -0.42 1.15 16 9 N -0.59 -13.95 2.85 -172.05 -0.49 -14.44 16 10 C 0.14 3.13 4.69 -3.71 -0.02 3.11 16 11 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 12 C -0.12 -1.78 5.20 -26.68 -0.14 -1.92 16 13 C 0.11 1.84 3.02 -67.59 -0.20 1.64 16 14 H 0.10 1.62 8.08 -51.93 -0.42 1.20 16 15 N -0.44 -6.89 2.62 -111.09 -0.29 -7.18 16 16 C -0.06 -0.83 11.54 -16.56 -0.19 -1.02 16 17 C -0.04 -0.60 11.87 -17.81 -0.21 -0.81 16 18 N -0.51 -8.54 11.25 -14.67 -0.16 -8.71 16 19 C 0.18 2.91 11.49 -90.38 -1.04 1.87 16 20 C 0.15 2.91 5.93 -3.48 -0.02 2.89 16 21 H 0.27 7.80 6.71 -40.82 -0.27 7.53 16 22 H 0.08 2.08 6.29 -51.93 -0.33 1.75 16 23 H 0.02 0.46 7.86 -51.93 -0.41 0.06 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 28 H 0.17 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.20 2.71 8.06 -52.48 -0.42 2.29 16 31 H 0.03 0.51 7.82 -51.93 -0.41 0.10 16 32 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -29.77 263.66 -8.00 -37.77 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.41 Total: 1.91 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.21 Total: -6.99 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.26 Total: -55.86 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.10 Total: 19.20 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.77 -8.00 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609157656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.694 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds