Wall clock time and date at job start Sun Mar 29 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00389 * 2 1 4 4 H 1.48495 * 109.47250 * 269.99867 * 3 2 1 5 5 H 1.48505 * 109.47013 * 149.99428 * 3 2 1 6 6 H 1.48503 * 109.46886 * 30.00188 * 3 2 1 7 7 C 1.38818 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99698 * 154.90699 * 7 2 1 9 9 N 1.36933 * 120.00073 * 334.91106 * 7 2 1 10 10 C 1.46925 * 120.63250 * 332.40159 * 9 7 2 11 11 C 1.53189 * 108.77489 * 233.58481 * 10 9 7 12 12 C 1.53043 * 109.31497 * 305.36212 * 11 10 9 13 13 C 1.53047 * 109.53579 * 61.36650 * 12 11 10 14 14 H 1.09000 * 109.49678 * 58.61433 * 13 12 11 15 15 N 1.46492 * 109.49867 * 178.68500 * 13 12 11 16 16 C 1.36887 * 126.39861 * 239.71753 * 15 13 12 17 17 C 1.34670 * 106.81894 * 179.84146 * 16 15 13 18 18 N 1.34130 * 108.01572 * 0.41749 * 17 16 15 19 19 C 1.30490 * 109.26119 * 359.73017 * 18 17 16 20 20 C 1.46931 * 120.62969 * 152.12143 * 9 7 2 21 21 H 0.97004 * 120.00436 * 174.25592 * 1 2 3 22 22 H 1.08997 * 109.58446 * 353.37125 * 10 9 7 23 23 H 1.09003 * 109.58796 * 113.65574 * 10 9 7 24 24 H 1.08997 * 109.49818 * 65.31447 * 11 10 9 25 25 H 1.09007 * 109.50031 * 185.41002 * 11 10 9 26 26 H 1.09005 * 109.46005 * 181.38240 * 12 11 10 27 27 H 1.08999 * 109.46046 * 301.36171 * 12 11 10 28 28 H 1.08000 * 126.58809 * 359.97070 * 16 15 13 29 29 H 1.07999 * 125.98812 * 180.11493 * 17 16 15 30 30 H 1.08003 * 125.65431 * 180.02562 * 19 18 17 31 31 H 1.09000 * 109.58814 * 246.20201 * 20 9 7 32 32 H 1.09000 * 109.58530 * 6.62388 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 3.5478 1.4400 0.7002 6 1 1.4477 2.6526 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0137 -1.2466 -0.3961 9 7 1.4223 -2.3319 0.5039 10 6 0.3916 -2.2384 1.5467 11 6 0.7998 -3.1284 2.7247 12 6 1.0559 -4.5503 2.2199 13 6 2.2024 -4.5348 1.2062 14 1 3.0980 -4.1285 1.6762 15 7 2.4676 -5.9004 0.7471 16 6 3.6470 -6.5842 0.8705 17 6 3.4528 -7.7984 0.3212 18 7 2.1921 -7.8511 -0.1337 19 6 1.5960 -6.7179 0.1180 20 6 1.8060 -3.6604 0.0070 21 1 -0.4851 -0.8358 -0.0841 22 1 0.3043 -1.2051 1.8825 23 1 -0.5649 -2.5745 1.1463 24 1 1.7085 -2.7349 3.1802 25 1 -0.0011 -3.1436 3.4640 26 1 1.3227 -5.1914 3.0602 27 1 0.1543 -4.9340 1.7423 28 1 4.5575 -6.2207 1.3234 29 1 4.1854 -8.5890 0.2539 30 1 0.5746 -6.4742 -0.1346 31 1 0.9631 -4.1125 -0.5156 32 1 2.6522 -3.5656 -0.6735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609157656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:32 Heat of formation + Delta-G solvation = 60.695690 kcal Electronic energy + Delta-G solvation = -15232.980854 eV Core-core repulsion = 12808.270797 eV Total energy + Delta-G solvation = -2424.710057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.02399 -39.47555 -35.91453 -33.77780 -32.40267 -30.68765 -29.70434 -27.17320 -24.50541 -24.03588 -22.45464 -21.90609 -20.58751 -19.46843 -18.20505 -16.42017 -16.26320 -15.96673 -15.58357 -15.45855 -15.03779 -14.74617 -14.54656 -14.37955 -14.04160 -13.66156 -13.01316 -12.62904 -12.52531 -11.99519 -11.94897 -11.88899 -11.83525 -11.35433 -10.95803 -10.71092 -10.40800 -9.43642 -9.04146 -8.32256 -5.48908 1.16288 1.58277 1.65133 1.80619 1.83770 2.22304 2.62530 3.16083 3.44410 3.54124 3.76218 3.83405 3.92032 4.00873 4.15901 4.33234 4.50306 4.57417 4.64149 4.73087 4.79807 4.86309 4.94761 4.98267 5.19663 5.35118 5.44668 5.76471 5.85793 6.24848 6.33399 6.95194 7.13642 7.67897 8.09063 8.93701 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046922 B = 0.007376 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.589660 B = 3795.318835 C = 4023.608092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.068 4.068 3 Si 1.115 2.885 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.363 4.363 8 H 0.051 0.949 9 N -0.611 5.611 10 C 0.149 3.851 11 C -0.121 4.121 12 C -0.107 4.107 13 C 0.130 3.870 14 H 0.100 0.900 15 N -0.446 5.446 16 C -0.057 4.057 17 C -0.051 4.051 18 N -0.531 5.531 19 C 0.171 3.829 20 C 0.148 3.852 21 H 0.256 0.744 22 H 0.050 0.950 23 H 0.010 0.990 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.189 0.811 30 H 0.209 0.791 31 H 0.023 0.977 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 -9.173 5.621 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.265 4.265 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.493 4.493 8 H 0.069 0.931 9 N -0.335 5.335 10 C 0.023 3.977 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.026 3.974 14 H 0.118 0.882 15 N -0.128 5.128 16 C -0.191 4.191 17 C -0.199 4.199 18 N -0.250 5.250 19 C -0.111 4.111 20 C 0.021 3.979 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.213 0.787 29 H 0.206 0.794 30 H 0.226 0.774 31 H 0.041 0.959 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.556 -8.036 5.341 10.670 hybrid contribution 0.297 -0.868 -0.099 0.923 sum 4.853 -8.904 5.242 11.415 Atomic orbital electron populations 1.70883 1.07561 1.29608 1.49866 1.27178 0.96521 1.04714 0.98091 0.82876 0.74162 0.72099 0.76978 1.21154 1.19975 1.21358 1.20203 0.97475 0.89520 1.42074 0.93114 1.44284 1.46263 1.01089 1.41880 1.20972 0.89656 0.98726 0.88312 1.21916 1.02132 0.94158 0.97839 1.21700 0.97112 0.97714 0.97972 1.22070 1.00762 0.77968 0.96635 0.88197 1.45822 1.11126 1.13043 1.42764 1.23250 0.91850 0.94710 1.09293 1.22701 0.94715 0.98156 1.04281 1.70265 1.08417 1.22526 1.23829 1.25105 0.98741 0.86950 1.00279 1.21216 0.97652 0.85865 0.93153 0.93398 0.93145 0.97153 0.91998 0.89494 0.90060 0.91398 0.78664 0.79385 0.77431 0.95916 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.23 12.40 21.65 0.27 -54.96 16 2 C -0.07 -3.73 4.68 84.86 0.40 -3.33 16 3 Si 1.11 49.14 29.99 68.60 2.06 51.19 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.36 -19.59 9.49 84.04 0.80 -18.79 16 8 H 0.05 2.75 7.94 -2.91 -0.02 2.73 16 9 N -0.61 -28.89 2.85 -698.26 -1.99 -30.87 16 10 C 0.15 6.46 4.69 86.36 0.41 6.86 16 11 C -0.12 -3.88 6.08 30.67 0.19 -3.69 16 12 C -0.11 -2.99 5.20 30.62 0.16 -2.83 16 13 C 0.13 4.01 3.02 45.22 0.14 4.15 16 14 H 0.10 3.08 8.08 -2.39 -0.02 3.06 16 15 N -0.45 -12.86 2.62 -505.39 -1.32 -14.19 16 16 C -0.06 -1.48 11.54 83.09 0.96 -0.52 16 17 C -0.05 -1.38 11.87 83.52 0.99 -0.39 16 18 N -0.53 -17.04 11.25 -200.31 -2.25 -19.29 16 19 C 0.17 5.15 11.49 180.26 2.07 7.23 16 20 C 0.15 5.84 5.93 86.51 0.51 6.35 16 21 H 0.26 15.32 6.71 -92.71 -0.62 14.70 16 22 H 0.05 2.53 6.29 -2.39 -0.02 2.51 16 23 H 0.01 0.47 7.86 -2.39 -0.02 0.45 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.07 1.88 7.98 -2.39 -0.02 1.86 16 28 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.19 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.21 5.48 8.06 -2.91 -0.02 5.45 16 31 H 0.02 0.91 7.82 -2.39 -0.02 0.89 16 32 H 0.05 1.96 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -64.14 263.66 4.61 -59.53 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.24 Total: 13.56 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.62 Total: -4.97 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.30 Total: -119.31 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.06 Total: 51.19 kcal Total: -64.14 4.61 -59.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609157656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.222 kcal (2) G-P(sol) polarization free energy of solvation -64.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds