Wall clock time and date at job start Sun Mar 29 2020 21:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.47844 * 111.00053 * 290.84796 * 10 9 7 12 12 C 1.54909 * 104.79741 * 213.63532 * 11 10 9 13 13 C 1.55144 * 101.65046 * 37.06713 * 12 11 10 14 14 H 1.08998 * 110.70425 * 82.73204 * 13 12 11 15 15 C 1.50700 * 110.70403 * 205.96283 * 13 12 11 16 16 C 1.34513 * 125.79140 * 233.59977 * 15 13 12 17 17 C 1.41380 * 106.84067 * 180.02562 * 16 15 13 18 18 C 1.34514 * 106.84255 * 359.97438 * 17 16 15 19 19 O 1.34303 * 125.78774 * 53.29883 * 15 13 12 20 20 C 1.47441 * 110.99881 * 170.00246 * 10 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 110.37177 * 332.46310 * 11 10 9 25 25 H 1.09003 * 110.37386 * 94.80362 * 11 10 9 26 26 H 1.08994 * 110.99058 * 278.97996 * 12 11 10 27 27 H 1.08997 * 111.02431 * 155.17154 * 12 11 10 28 28 H 1.08003 * 126.58017 * 359.96770 * 16 15 13 29 29 H 1.07999 * 126.58032 * 180.02562 * 17 16 15 30 30 H 1.07997 * 125.79012 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.88594 * 242.66013 * 20 10 9 32 32 H 1.08999 * 109.88938 * 3.69455 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9233 -3.7049 -1.2793 12 6 3.1617 -5.2202 -1.4954 13 6 1.8504 -5.8273 -0.9308 14 1 1.0580 -5.7957 -1.6786 15 6 2.0788 -7.2384 -0.4536 16 6 1.3723 -8.3198 -0.8288 17 6 1.9220 -9.4266 -0.1421 18 6 2.9319 -8.9555 0.6112 19 8 3.0259 -7.6303 0.4142 20 6 1.5189 -4.8970 0.2550 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.3100 -3.2988 -2.0837 25 1 3.8744 -3.1755 -1.2218 26 1 4.0268 -5.5640 -0.9285 27 1 3.2746 -5.4512 -2.5546 28 1 0.5435 -8.3387 -1.5210 29 1 1.5945 -10.4535 -0.2101 30 1 3.5631 -9.5439 1.2606 31 1 1.8782 -5.3387 1.1844 32 1 0.4425 -4.7356 0.3131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609539764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:36 Heat of formation + Delta-G solvation = 15.809946 kcal Electronic energy + Delta-G solvation = -14692.518186 eV Core-core repulsion = 12233.568986 eV Total energy + Delta-G solvation = -2458.949200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.47876 -38.20819 -33.39327 -32.85236 -31.60840 -29.36269 -27.71347 -26.07371 -22.63796 -21.85589 -21.40220 -20.06418 -19.67687 -17.26960 -16.41764 -15.79059 -15.23242 -14.99217 -14.31641 -13.56826 -13.12421 -13.05972 -12.73532 -12.57491 -12.51151 -11.73773 -11.60439 -11.21993 -11.07212 -10.80105 -10.62030 -10.44314 -10.30360 -9.83828 -9.81217 -9.16892 -8.43780 -8.30548 -7.23204 -6.01455 -4.02763 1.83855 2.68642 3.10413 3.33083 3.39206 3.44203 4.44182 4.70075 4.91460 5.01161 5.07296 5.12937 5.31293 5.37982 5.51312 5.79337 5.86197 5.88339 5.99855 6.09713 6.22912 6.25256 6.47383 6.55396 6.62513 6.68575 7.19927 7.26915 7.31797 7.82263 8.05483 8.20171 8.53995 9.05388 9.61772 11.09571 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071023 B = 0.005523 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.145304 B = 5068.586219 C = 5177.432392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.187 3.813 10 N -0.527 5.527 11 C 0.058 3.942 12 C -0.124 4.124 13 C -0.036 4.036 14 H 0.101 0.899 15 C 0.022 3.978 16 C -0.224 4.224 17 C -0.214 4.214 18 C -0.052 4.052 19 O -0.169 6.169 20 C 0.051 3.949 21 H 0.261 0.739 22 H 0.030 0.970 23 H -0.007 1.007 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.199 0.801 31 H 0.068 0.932 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -15.555 -2.150 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.061 3.939 10 N -0.252 5.252 11 C -0.070 4.070 12 C -0.162 4.162 13 C -0.055 4.055 14 H 0.119 0.881 15 C -0.029 4.029 16 C -0.243 4.243 17 C -0.234 4.234 18 C -0.120 4.120 19 O -0.064 6.064 20 C -0.077 4.077 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.011 0.989 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.216 0.784 31 H 0.087 0.913 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.279 -15.110 -1.598 15.785 hybrid contribution -0.451 0.466 -0.666 0.930 sum 3.827 -14.644 -2.264 15.305 Atomic orbital electron populations 1.69956 1.06078 1.26771 1.51185 1.24991 0.94862 0.99334 0.95454 0.86493 0.79836 0.83056 0.78015 1.20746 1.21269 1.19752 1.21158 0.93572 0.89904 1.49841 0.91887 1.19964 0.90046 0.87740 0.96108 1.63697 1.28518 1.02258 1.30698 1.22862 0.99592 0.93097 0.91452 1.22863 0.96350 0.96652 1.00357 1.21157 0.99481 0.86212 0.98694 0.88054 1.22334 0.90423 0.96532 0.93638 1.21569 1.04474 0.91929 1.06353 1.21771 0.99710 1.00179 1.01695 1.23972 1.02292 0.81441 1.04258 1.84042 1.47122 1.23999 1.51274 1.22871 0.98158 0.90276 0.96440 0.92939 0.95218 0.98904 0.93556 0.90645 0.90675 0.91179 0.83750 0.83809 0.78429 0.91343 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.42 8.80 -34.44 -0.30 -14.72 16 8 H 0.06 1.78 7.77 -52.49 -0.41 1.37 16 9 C 0.19 4.94 4.33 -4.97 -0.02 4.92 16 10 N -0.53 -11.72 5.15 -232.68 -1.20 -12.92 16 11 C 0.06 1.12 6.14 -2.30 -0.01 1.11 16 12 C -0.12 -1.94 6.51 -24.59 -0.16 -2.10 16 13 C -0.04 -0.57 3.39 -89.95 -0.31 -0.87 16 14 H 0.10 1.47 8.13 -51.93 -0.42 1.04 16 15 C 0.02 0.32 5.79 -35.62 -0.21 0.12 16 16 C -0.22 -2.96 10.80 -39.70 -0.43 -3.39 16 17 C -0.21 -2.50 10.91 -39.70 -0.43 -2.93 16 18 C -0.05 -0.61 12.09 29.42 0.36 -0.25 16 19 O -0.17 -2.52 10.47 5.70 0.06 -2.46 16 20 C 0.05 0.96 6.45 -2.84 -0.02 0.94 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 23 H -0.01 -0.19 7.85 -51.93 -0.41 -0.60 16 24 H 0.05 0.93 7.62 -51.93 -0.40 0.54 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 32 H 0.05 1.03 7.55 -51.93 -0.39 0.64 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -31.03 271.85 -7.47 -38.49 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.51 Total: -2.07 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.63 Total: -15.71 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.46 Total: -39.13 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: 0.06 Total: -2.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.03 -7.47 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609539764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.301 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds