Wall clock time and date at job start Sun Mar 29 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.47844 * 111.00053 * 290.84796 * 10 9 7 12 12 C 1.54909 * 104.79741 * 213.63532 * 11 10 9 13 13 C 1.55144 * 101.65046 * 37.06713 * 12 11 10 14 14 H 1.08998 * 110.70425 * 82.73204 * 13 12 11 15 15 C 1.50700 * 110.70403 * 205.96283 * 13 12 11 16 16 C 1.34513 * 125.79140 * 233.59977 * 15 13 12 17 17 C 1.41380 * 106.84067 * 180.02562 * 16 15 13 18 18 C 1.34514 * 106.84255 * 359.97438 * 17 16 15 19 19 O 1.34303 * 125.78774 * 53.29883 * 15 13 12 20 20 C 1.47441 * 110.99881 * 170.00246 * 10 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 110.37177 * 332.46310 * 11 10 9 25 25 H 1.09003 * 110.37386 * 94.80362 * 11 10 9 26 26 H 1.08994 * 110.99058 * 278.97996 * 12 11 10 27 27 H 1.08997 * 111.02431 * 155.17154 * 12 11 10 28 28 H 1.08003 * 126.58017 * 359.96770 * 16 15 13 29 29 H 1.07999 * 126.58032 * 180.02562 * 17 16 15 30 30 H 1.07997 * 125.79012 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.88594 * 242.66013 * 20 10 9 32 32 H 1.08999 * 109.88938 * 3.69455 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9233 -3.7049 -1.2793 12 6 3.1617 -5.2202 -1.4954 13 6 1.8504 -5.8273 -0.9308 14 1 1.0580 -5.7957 -1.6786 15 6 2.0788 -7.2384 -0.4536 16 6 1.3723 -8.3198 -0.8288 17 6 1.9220 -9.4266 -0.1421 18 6 2.9319 -8.9555 0.6112 19 8 3.0259 -7.6303 0.4142 20 6 1.5189 -4.8970 0.2550 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.3100 -3.2988 -2.0837 25 1 3.8744 -3.1755 -1.2218 26 1 4.0268 -5.5640 -0.9285 27 1 3.2746 -5.4512 -2.5546 28 1 0.5435 -8.3387 -1.5210 29 1 1.5945 -10.4535 -0.2101 30 1 3.5631 -9.5439 1.2606 31 1 1.8782 -5.3387 1.1844 32 1 0.4425 -4.7356 0.3131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609539764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:35 Heat of formation + Delta-G solvation = -4.399683 kcal Electronic energy + Delta-G solvation = -14693.394541 eV Core-core repulsion = 12233.568986 eV Total energy + Delta-G solvation = -2459.825556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.47606 -39.76989 -35.31616 -33.96883 -33.23743 -30.75799 -29.27506 -27.79048 -24.56706 -22.99026 -22.50322 -21.70460 -20.84852 -18.58979 -18.25336 -17.03307 -16.83030 -16.29391 -16.07611 -15.10921 -14.74515 -14.46851 -14.35184 -13.67496 -13.60219 -13.34416 -13.26791 -12.95815 -12.60042 -12.51683 -12.37861 -12.02983 -11.89591 -11.69070 -11.27417 -10.79581 -10.62712 -9.34586 -9.01849 -8.21499 -6.32232 0.84136 1.41038 1.42794 1.54683 1.75126 2.14338 2.40465 3.10897 3.33495 3.61358 3.69791 3.84144 4.15284 4.23824 4.34460 4.40927 4.53166 4.66350 4.89337 4.91205 4.94726 5.01573 5.06283 5.11837 5.21930 5.25286 5.29430 5.64582 5.67449 6.01925 6.28622 6.29000 6.54607 6.83694 7.38064 8.89761 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071023 B = 0.005523 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.145304 B = 5068.586219 C = 5177.432392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.204 3.796 10 N -0.542 5.542 11 C 0.055 3.945 12 C -0.108 4.108 13 C -0.024 4.024 14 H 0.112 0.888 15 C -0.010 4.010 16 C -0.219 4.219 17 C -0.223 4.223 18 C -0.048 4.048 19 O -0.192 6.192 20 C 0.050 3.950 21 H 0.265 0.735 22 H 0.000 1.000 23 H -0.030 1.030 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.236 0.764 31 H 0.066 0.934 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -16.778 -2.589 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.267 5.267 11 C -0.073 4.073 12 C -0.146 4.146 13 C -0.044 4.044 14 H 0.130 0.870 15 C -0.060 4.060 16 C -0.238 4.238 17 C -0.242 4.242 18 C -0.114 4.114 19 O -0.089 6.089 20 C -0.078 4.078 21 H 0.074 0.926 22 H 0.018 0.982 23 H -0.013 1.013 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.176 0.824 29 H 0.189 0.811 30 H 0.252 0.748 31 H 0.084 0.916 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.394 -16.357 -2.043 17.344 hybrid contribution -0.811 0.735 -0.486 1.197 sum 4.584 -15.622 -2.529 16.475 Atomic orbital electron populations 1.70081 1.07754 1.27994 1.51719 1.25927 0.95764 1.03251 0.94648 0.85353 0.78487 0.78063 0.78538 1.19560 1.20643 1.19040 1.21454 0.93623 0.91120 1.50229 0.92090 1.19595 0.90018 0.89176 0.93485 1.63567 1.27861 1.02620 1.32625 1.22881 0.98574 0.96125 0.89694 1.22767 0.96378 0.93257 1.02222 1.20967 0.99696 0.86473 0.97214 0.86951 1.22117 0.92075 0.96225 0.95589 1.21906 1.04064 0.92006 1.05847 1.22149 0.99586 1.01131 1.01313 1.24823 1.02390 0.80364 1.03870 1.84020 1.47509 1.25736 1.51630 1.22840 0.97212 0.89630 0.98138 0.92603 0.98227 1.01260 0.94727 0.91075 0.90578 0.88260 0.82352 0.81074 0.74787 0.91586 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.68 8.80 25.60 0.23 -30.45 16 8 H 0.06 3.50 7.77 -2.91 -0.02 3.48 16 9 C 0.20 11.26 4.33 85.56 0.37 11.63 16 10 N -0.54 -24.82 5.15 -890.07 -4.59 -29.41 16 11 C 0.05 2.14 6.14 86.77 0.53 2.68 16 12 C -0.11 -3.25 6.51 31.98 0.21 -3.04 16 13 C -0.02 -0.74 3.39 -10.36 -0.04 -0.78 16 14 H 0.11 3.14 8.13 -2.39 -0.02 3.13 16 15 C -0.01 -0.28 5.79 24.83 0.14 -0.13 16 16 C -0.22 -5.29 10.80 22.19 0.24 -5.05 16 17 C -0.22 -4.51 10.91 22.19 0.24 -4.27 16 18 C -0.05 -0.97 12.09 66.97 0.81 -0.17 16 19 O -0.19 -5.43 10.47 -2.50 -0.03 -5.45 16 20 C 0.05 1.93 6.45 86.65 0.56 2.49 16 21 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.00 -0.02 8.03 -2.39 -0.02 -0.04 16 23 H -0.03 -1.77 7.85 -2.38 -0.02 -1.79 16 24 H 0.03 1.42 7.62 -2.39 -0.02 1.40 16 25 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.07 2.55 7.78 -2.39 -0.02 2.53 16 32 H 0.04 1.74 7.55 -2.39 -0.02 1.72 16 Total: -1.00 -67.69 271.85 2.54 -65.15 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.09 Total: 6.11 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 3.76 Total: -26.51 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.30 Total: -86.17 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.03 Total: -5.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.69 2.54 -65.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609539764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.750 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds