Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00600 * 2 1 4 4 C 1.53001 * 109.47069 * 270.00057 * 3 2 1 5 5 C 1.50698 * 109.47192 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99916 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00104 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46899 * 90.00272 * 9 7 5 11 11 H 1.48494 * 109.47203 * 210.00305 * 9 7 5 12 12 H 1.48504 * 109.47225 * 330.00624 * 9 7 5 13 13 C 1.39673 * 119.99729 * 179.97438 * 2 1 3 14 14 C 1.38971 * 120.04941 * 179.97438 * 13 2 1 15 15 C 1.38105 * 120.03782 * 180.02562 * 14 13 2 16 16 C 1.38223 * 120.12887 * 359.97438 * 15 14 13 17 17 C 1.38772 * 120.09207 * 0.02562 * 16 15 14 18 18 O 1.35890 * 120.01540 * 180.02562 * 17 16 15 19 19 C 1.38611 * 119.96162 * 0.02562 * 17 16 15 20 20 H 1.08999 * 109.47097 * 270.00396 * 1 2 3 21 21 H 1.09010 * 109.46498 * 30.00249 * 1 2 3 22 22 H 1.09000 * 109.47510 * 149.99810 * 1 2 3 23 23 H 1.08997 * 109.47233 * 29.99627 * 3 2 1 24 24 H 1.08992 * 109.47515 * 149.99923 * 3 2 1 25 25 H 1.09005 * 109.46598 * 299.99587 * 4 3 2 26 26 H 1.08996 * 109.47497 * 59.99428 * 4 3 2 27 27 H 0.96996 * 119.99995 * 179.97438 * 8 7 5 28 28 H 1.08004 * 119.97746 * 0.02731 * 14 13 2 29 29 H 1.08004 * 119.93923 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.95161 * 179.97438 * 16 15 14 31 31 H 0.96705 * 113.99927 * 269.99184 * 18 17 16 32 32 H 1.08005 * 120.06230 * 180.25248 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2057 3.0156 -1.4425 6 1 3.4751 3.4836 -0.5073 7 6 3.5499 3.6129 -2.6366 8 7 4.2067 4.7523 -2.6367 9 14 3.0833 2.8037 -4.2544 10 1 1.7467 3.2886 -4.6829 11 1 4.0905 3.1494 -5.2893 12 1 3.0417 1.3299 -4.0768 13 6 2.1633 -1.2096 0.0005 14 6 3.5530 -1.2109 0.0000 15 6 4.2432 -2.4071 0.0000 16 6 3.5545 -3.6055 0.0011 17 6 2.1668 -3.6105 0.0016 18 8 1.4913 -4.7896 0.0032 19 6 1.4702 -2.4122 0.0005 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6086 2.0283 0.5138 24 1 3.1499 1.1383 0.5138 25 1 3.0417 0.9505 -1.9563 26 1 1.5003 1.8406 -1.9564 27 1 4.4491 5.1723 -3.4767 28 1 4.0935 -0.2758 -0.0004 29 1 5.3233 -2.4062 -0.0008 30 1 4.0972 -4.5393 0.0007 31 1 1.2953 -5.1318 -0.8798 32 1 0.3902 -2.4141 0.0051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610213378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = -14.247965 kcal Electronic energy + Delta-G solvation = -14628.417939 eV Core-core repulsion = 12168.165330 eV Total energy + Delta-G solvation = -2460.252609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64705 -37.51284 -35.37990 -33.13095 -31.05913 -29.39989 -29.30776 -26.38136 -24.23973 -22.07862 -21.36026 -20.09629 -18.07972 -16.84413 -16.60057 -15.64090 -15.15554 -14.74087 -14.46777 -13.90448 -13.74786 -13.47675 -12.90701 -12.65153 -12.05027 -11.87196 -11.82225 -11.66735 -11.17297 -10.90752 -10.54932 -10.40342 -10.00071 -9.86483 -9.36701 -9.30030 -8.60993 -8.46877 -6.90889 -6.11632 -4.11059 1.57089 1.83880 3.26094 3.34335 3.39578 3.51418 3.99356 4.39664 4.44593 5.10929 5.22556 5.33256 5.45270 5.55768 5.65310 5.77302 5.79905 5.94643 5.98421 6.13191 6.28004 6.51358 6.58011 6.68817 6.82517 6.92254 7.14337 7.22551 7.57229 7.71505 7.82449 7.92611 8.43012 8.91528 9.50620 11.01347 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035112 B = 0.006983 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.263677 B = 4008.859788 C = 4184.914933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.627 5.627 3 C 0.131 3.869 4 C -0.027 4.027 5 C -0.524 4.524 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.241 3.759 14 C -0.201 4.201 15 C -0.057 4.057 16 C -0.217 4.217 17 C 0.142 3.858 18 O -0.505 6.505 19 C -0.236 4.236 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.020 0.980 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.386 0.614 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -14.509 3.506 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.335 5.335 3 C 0.010 3.990 4 C -0.065 4.065 5 C -0.562 4.562 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.190 1.190 13 C 0.137 3.863 14 C -0.223 4.223 15 C -0.076 4.076 16 C -0.238 4.238 17 C 0.098 3.902 18 O -0.315 6.315 19 C -0.260 4.260 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.241 0.759 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.132 -14.097 4.012 15.530 hybrid contribution -0.299 -0.296 -1.517 1.574 sum -5.431 -14.393 2.495 15.584 Atomic orbital electron populations 1.21596 0.80427 1.02459 1.00601 1.46911 1.04835 1.03782 1.77980 1.21650 0.95757 0.82002 0.99637 1.19947 0.96714 0.97203 0.92678 1.20993 1.35999 1.04581 0.94641 0.90843 1.24978 0.94443 0.94568 0.99118 1.69904 1.39645 1.17324 1.27019 0.86792 0.78358 0.80611 0.83645 1.20352 1.21279 1.18980 1.17712 0.91268 0.85622 0.91746 1.20938 0.92386 0.99281 1.09687 1.20743 0.99400 0.91400 0.96098 1.21025 0.93228 0.98378 1.11120 1.18107 0.89729 0.84198 0.98188 1.84768 1.77056 1.36342 1.33288 1.20799 0.99877 0.90793 1.14483 0.93743 0.91216 0.92001 0.91322 0.91044 0.96133 0.97006 0.92617 0.84913 0.85945 0.86444 0.75851 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 10.19 59.85 0.61 1.90 16 2 N -0.63 -10.79 3.01 -179.64 -0.54 -11.33 16 3 C 0.13 2.54 5.10 -4.04 -0.02 2.52 16 4 C -0.03 -0.63 4.36 -27.88 -0.12 -0.75 16 5 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 6 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.24 4.11 6.55 -83.81 -0.55 3.57 16 14 C -0.20 -3.39 9.20 -39.36 -0.36 -3.75 16 15 C -0.06 -0.85 10.03 -39.64 -0.40 -1.24 16 16 C -0.22 -3.06 9.98 -39.39 -0.39 -3.46 16 17 C 0.14 2.07 6.70 -39.25 -0.26 1.81 16 18 O -0.50 -6.28 13.50 -19.39 -0.26 -6.55 16 19 C -0.24 -3.63 9.14 -39.24 -0.36 -3.99 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.96 8.07 -51.92 -0.42 0.54 16 22 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 23 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 24 H 0.07 1.37 6.19 -51.93 -0.32 1.05 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.13 2.34 6.14 -52.48 -0.32 2.02 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.39 2.91 9.06 45.56 0.41 3.32 16 32 H 0.12 1.72 6.14 -52.48 -0.32 1.40 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -31.61 270.29 -6.25 -37.86 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.33 Total: 1.81 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.29 Total: -16.31 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.23 Total: -37.90 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.26 Total: -6.55 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.61 -6.25 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610213378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.608 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds