Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00600 * 2 1 4 4 C 1.53001 * 109.47069 * 270.00057 * 3 2 1 5 5 C 1.50698 * 109.47192 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99916 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00104 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46899 * 90.00272 * 9 7 5 11 11 H 1.48494 * 109.47203 * 210.00305 * 9 7 5 12 12 H 1.48504 * 109.47225 * 330.00624 * 9 7 5 13 13 C 1.39673 * 119.99729 * 179.97438 * 2 1 3 14 14 C 1.38971 * 120.04941 * 179.97438 * 13 2 1 15 15 C 1.38105 * 120.03782 * 180.02562 * 14 13 2 16 16 C 1.38223 * 120.12887 * 359.97438 * 15 14 13 17 17 C 1.38772 * 120.09207 * 0.02562 * 16 15 14 18 18 O 1.35890 * 120.01540 * 180.02562 * 17 16 15 19 19 C 1.38611 * 119.96162 * 0.02562 * 17 16 15 20 20 H 1.08999 * 109.47097 * 270.00396 * 1 2 3 21 21 H 1.09010 * 109.46498 * 30.00249 * 1 2 3 22 22 H 1.09000 * 109.47510 * 149.99810 * 1 2 3 23 23 H 1.08997 * 109.47233 * 29.99627 * 3 2 1 24 24 H 1.08992 * 109.47515 * 149.99923 * 3 2 1 25 25 H 1.09005 * 109.46598 * 299.99587 * 4 3 2 26 26 H 1.08996 * 109.47497 * 59.99428 * 4 3 2 27 27 H 0.96996 * 119.99995 * 179.97438 * 8 7 5 28 28 H 1.08004 * 119.97746 * 0.02731 * 14 13 2 29 29 H 1.08004 * 119.93923 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.95161 * 179.97438 * 16 15 14 31 31 H 0.96705 * 113.99927 * 269.99184 * 18 17 16 32 32 H 1.08005 * 120.06230 * 180.25248 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2057 3.0156 -1.4425 6 1 3.4751 3.4836 -0.5073 7 6 3.5499 3.6129 -2.6366 8 7 4.2067 4.7523 -2.6367 9 14 3.0833 2.8037 -4.2544 10 1 1.7467 3.2886 -4.6829 11 1 4.0905 3.1494 -5.2893 12 1 3.0417 1.3299 -4.0768 13 6 2.1633 -1.2096 0.0005 14 6 3.5530 -1.2109 0.0000 15 6 4.2432 -2.4071 0.0000 16 6 3.5545 -3.6055 0.0011 17 6 2.1668 -3.6105 0.0016 18 8 1.4913 -4.7896 0.0032 19 6 1.4702 -2.4122 0.0005 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6086 2.0283 0.5138 24 1 3.1499 1.1383 0.5138 25 1 3.0417 0.9505 -1.9563 26 1 1.5003 1.8406 -1.9564 27 1 4.4491 5.1723 -3.4767 28 1 4.0935 -0.2758 -0.0004 29 1 5.3233 -2.4062 -0.0008 30 1 4.0972 -4.5393 0.0007 31 1 1.2953 -5.1318 -0.8798 32 1 0.3902 -2.4141 0.0051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610213378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = -35.509209 kcal Electronic energy + Delta-G solvation = -14629.339896 eV Core-core repulsion = 12168.165330 eV Total energy + Delta-G solvation = -2461.174566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80286 -38.67205 -36.61592 -35.10923 -32.78112 -30.72242 -30.47652 -27.88382 -25.74815 -23.37684 -22.85725 -21.49609 -19.37408 -18.78874 -17.76575 -16.86575 -16.49812 -16.33338 -15.75446 -15.31842 -15.10499 -14.72038 -14.52748 -14.51518 -13.50029 -13.18697 -12.97788 -12.92686 -12.89871 -12.40470 -12.20639 -11.84240 -11.74302 -11.44050 -11.37935 -10.80464 -10.63311 -9.61775 -8.32995 -8.17364 -6.36906 0.42783 0.67685 1.31275 1.34272 1.45897 2.24928 2.32381 2.86294 3.02849 3.42201 3.99044 4.13527 4.32686 4.37224 4.43107 4.50398 4.62711 4.74938 4.81791 4.85118 4.90076 5.00770 5.21881 5.33151 5.43519 5.56770 5.57461 5.67186 5.86465 6.19392 6.41077 6.60030 6.71369 6.94096 7.28376 8.83590 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035112 B = 0.006983 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.263677 B = 4008.859788 C = 4184.914933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.635 5.635 3 C 0.144 3.856 4 C -0.016 4.016 5 C -0.530 4.530 6 H 0.040 0.960 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.256 1.256 13 C 0.222 3.778 14 C -0.227 4.227 15 C -0.058 4.058 16 C -0.216 4.216 17 C 0.146 3.854 18 O -0.508 6.508 19 C -0.239 4.239 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.012 0.988 26 H 0.015 0.985 27 H 0.267 0.733 28 H 0.114 0.886 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.410 0.590 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -16.999 2.887 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.344 5.344 3 C 0.021 3.979 4 C -0.055 4.055 5 C -0.568 4.568 6 H 0.059 0.941 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.180 1.180 13 C 0.118 3.882 14 C -0.250 4.250 15 C -0.076 4.076 16 C -0.237 4.237 17 C 0.101 3.899 18 O -0.321 6.321 19 C -0.262 4.262 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.269 0.731 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.248 -16.629 3.392 18.085 hybrid contribution 0.064 0.400 -1.249 1.313 sum -6.184 -16.229 2.144 17.499 Atomic orbital electron populations 1.21774 0.78503 1.03215 1.01867 1.46844 1.05937 1.02868 1.78765 1.21261 0.96174 0.83528 0.96917 1.19801 0.95731 0.94590 0.95384 1.21318 1.35932 1.06122 0.93444 0.94121 1.25881 0.94476 0.95110 1.03103 1.70043 1.41350 1.19098 1.28173 0.85722 0.78489 0.79889 0.78909 1.19114 1.20789 1.18043 1.17917 0.91455 0.86079 0.92744 1.20980 0.92816 0.99471 1.11708 1.20994 1.00544 0.90927 0.95163 1.21315 0.93396 0.98967 1.09974 1.18203 0.90020 0.84628 0.97020 1.84713 1.76719 1.35271 1.35397 1.20957 1.00642 0.90436 1.14213 0.92196 0.91345 0.90346 0.90966 0.91660 0.96971 0.96693 0.92390 0.86797 0.83960 0.84149 0.73103 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.29 10.19 127.77 1.30 3.59 16 2 N -0.64 -21.20 3.01 -722.26 -2.17 -23.37 16 3 C 0.14 5.61 5.10 86.38 0.44 6.05 16 4 C -0.02 -0.77 4.36 29.85 0.13 -0.64 16 5 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 6 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 9 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 13 C 0.22 7.30 6.55 38.20 0.25 7.55 16 14 C -0.23 -7.59 9.20 22.41 0.21 -7.38 16 15 C -0.06 -1.60 10.03 22.23 0.22 -1.38 16 16 C -0.22 -5.49 9.98 22.39 0.22 -5.27 16 17 C 0.15 3.82 6.70 22.49 0.15 3.97 16 18 O -0.51 -10.79 13.50 -92.31 -1.25 -12.04 16 19 C -0.24 -6.79 9.14 22.49 0.21 -6.58 16 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.07 1.76 8.07 -2.38 -0.02 1.74 16 22 H 0.08 1.74 6.20 -2.39 -0.01 1.73 16 23 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 24 H 0.07 2.59 6.19 -2.39 -0.01 2.58 16 25 H 0.01 0.58 7.20 -2.38 -0.02 0.56 16 26 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.11 4.15 6.14 -2.91 -0.02 4.13 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.41 4.57 9.06 -74.05 -0.67 3.90 16 32 H 0.14 3.41 6.14 -2.91 -0.02 3.39 16 Total: -1.00 -67.64 270.29 3.00 -64.64 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.39 Total: 11.41 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 3.84 Total: -28.71 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.87 Total: -81.80 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.25 Total: -12.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -67.64 3.00 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610213378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.127 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds