Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 C 1.53002 * 109.46877 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47382 * 65.00188 * 4 3 2 6 6 C 1.36845 * 119.99771 * 264.60149 * 5 4 3 7 7 H 1.07999 * 120.00099 * 144.19446 * 6 5 4 8 8 C 1.38798 * 119.99886 * 324.19115 * 6 5 4 9 9 N 1.31587 * 120.00220 * 339.65921 * 8 6 5 10 10 Si 1.86804 * 119.99816 * 159.66017 * 8 6 5 11 11 H 1.48499 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46896 * 120.00175 * 10 8 6 13 13 H 1.48503 * 109.47140 * 239.99796 * 10 8 6 14 14 C 1.39297 * 120.00006 * 84.59458 * 5 4 3 15 15 C 1.39082 * 120.08466 * 180.02562 * 14 5 4 16 16 C 1.38049 * 119.90710 * 179.97438 * 15 14 5 17 17 C 1.38334 * 120.08801 * 359.97438 * 16 15 14 18 18 C 1.38326 * 120.18397 * 0.02562 * 17 16 15 19 19 C 1.38055 * 120.08670 * 0.02562 * 18 17 16 20 20 H 1.09001 * 109.47375 * 300.00165 * 1 2 3 21 21 H 1.09002 * 109.47319 * 59.99864 * 1 2 3 22 22 H 1.09007 * 109.47027 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47220 * 60.00087 * 3 2 1 24 24 H 1.08998 * 109.47197 * 299.99793 * 3 2 1 25 25 H 1.08998 * 109.47224 * 304.99737 * 4 3 2 26 26 H 1.09008 * 109.46931 * 185.00097 * 4 3 2 27 27 H 0.96999 * 120.00126 * 179.97438 * 9 8 6 28 28 H 1.07995 * 120.04750 * 359.70780 * 15 14 5 29 29 H 1.07996 * 119.95893 * 180.02562 * 16 15 14 30 30 H 1.08007 * 119.90900 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.95841 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.04670 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2031 -0.7839 -1.3054 7 1 3.9615 -1.3377 -2.2005 8 6 4.7443 -1.4397 -0.2084 9 7 5.4009 -0.7594 0.7069 10 14 4.5407 -3.2881 -0.0313 11 1 3.7687 -3.8140 -1.1857 12 1 5.8783 -3.9324 0.0039 13 1 3.8138 -3.5876 1.2286 14 6 4.1626 1.3474 -2.3896 15 6 4.5800 0.7603 -3.5794 16 6 4.7637 1.5395 -4.7041 17 6 4.5326 2.9023 -4.6489 18 6 4.1173 3.4900 -3.4675 19 6 3.9324 2.7180 -2.3381 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8514 0.5683 0.8409 26 1 3.9784 2.1766 0.0889 27 1 5.7789 -1.2177 1.4737 28 1 4.7644 -0.3029 -3.6222 29 1 5.0874 1.0845 -5.6285 30 1 4.6775 3.5093 -5.5304 31 1 3.9375 4.5542 -3.4287 32 1 3.6085 3.1775 -1.4160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610215540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = -5.364543 kcal Electronic energy + Delta-G solvation = -15222.871627 eV Core-core repulsion = 12763.004232 eV Total energy + Delta-G solvation = -2459.867395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.57795 -37.11599 -35.31771 -31.94541 -30.25102 -29.31431 -27.69083 -25.90260 -24.28535 -22.20568 -21.14946 -19.87210 -17.19829 -16.65492 -15.55609 -15.38989 -14.88924 -14.39959 -14.06379 -13.94063 -13.22336 -12.90839 -12.49434 -12.30622 -11.97280 -11.48526 -11.20932 -11.13022 -10.98815 -10.61740 -10.43164 -10.26020 -10.21858 -9.69057 -9.21475 -9.03178 -8.34816 -7.89657 -6.54619 -6.10428 -3.75550 2.52332 2.71712 3.24688 3.29210 3.34258 4.18152 4.45346 4.84431 4.95778 5.21782 5.61709 5.69595 5.86479 5.91128 5.92586 5.98863 6.02379 6.17854 6.23074 6.41306 6.51504 6.71369 6.91181 7.13923 7.24930 7.49227 7.54488 7.61509 7.68543 7.82029 8.03447 8.29160 8.77276 9.40097 9.76604 10.74799 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.011600 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.439046 B = 2413.235995 C = 3104.711749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.047 3.953 4 C 0.113 3.887 5 N -0.436 5.436 6 C -0.291 4.291 7 H 0.085 0.915 8 C 0.036 3.964 9 N -0.872 5.872 10 Si 0.918 3.082 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.219 3.781 15 C -0.207 4.207 16 C -0.072 4.072 17 C -0.243 4.243 18 C -0.069 4.069 19 C -0.242 4.242 20 H 0.030 0.970 21 H 0.032 0.968 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.119 0.881 26 H 0.064 0.936 27 H 0.266 0.734 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 3.330 -1.485 6.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.031 4.031 4 C -0.012 4.012 5 N -0.123 5.123 6 C -0.419 4.419 7 H 0.103 0.897 8 C -0.168 4.168 9 N -0.509 5.509 10 Si 0.746 3.254 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.207 1.207 14 C 0.104 3.896 15 C -0.231 4.231 16 C -0.091 4.091 17 C -0.264 4.264 18 C -0.088 4.088 19 C -0.266 4.266 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.136 0.864 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.392 2.915 -1.017 6.213 hybrid contribution -0.357 -0.549 0.229 0.694 sum -5.749 2.366 -0.788 6.266 Atomic orbital electron populations 1.22657 0.83365 1.01826 0.98823 1.88146 1.17412 1.27477 1.94999 1.23161 0.96848 0.84660 0.98442 1.21575 0.89047 0.98732 0.91853 1.42300 1.58778 1.05615 1.05600 1.19265 1.38789 0.81782 1.02064 0.89723 1.25264 0.94516 0.99892 0.97086 1.69961 1.31893 1.36596 1.12410 0.86005 0.77740 0.83140 0.78562 1.19344 1.21133 1.20655 1.18208 0.92691 0.89748 0.88965 1.20531 1.10370 0.99887 0.92280 1.20658 0.97928 0.93748 0.96775 1.20369 1.13407 0.94971 0.97698 1.20531 0.97773 0.97627 0.92905 1.20391 1.14945 0.92713 0.98586 0.95178 0.94897 0.90399 0.94363 0.94154 0.86384 0.91793 0.92393 0.86577 0.88177 0.88634 0.88335 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.70 10.43 -35.23 -0.37 -8.07 16 3 C 0.05 0.93 6.16 37.16 0.23 1.16 16 4 C 0.11 2.57 4.97 -4.04 -0.02 2.55 16 5 N -0.44 -10.97 2.61 -113.13 -0.29 -11.27 16 6 C -0.29 -7.75 8.32 -15.11 -0.13 -7.87 16 7 H 0.09 2.27 6.77 -52.49 -0.36 1.91 16 8 C 0.04 0.95 4.95 -17.45 -0.09 0.86 16 9 N -0.87 -23.66 11.35 55.49 0.63 -23.03 16 10 Si 0.92 20.87 29.60 -169.99 -5.03 15.84 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.22 5.23 6.49 -83.84 -0.54 4.69 16 15 C -0.21 -4.75 9.26 -39.34 -0.36 -5.12 16 16 C -0.07 -1.45 10.04 -39.62 -0.40 -1.84 16 17 C -0.24 -4.65 10.04 -39.51 -0.40 -5.05 16 18 C -0.07 -1.34 10.04 -39.62 -0.40 -1.74 16 19 C -0.24 -5.18 8.80 -39.34 -0.35 -5.52 16 20 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.79 7.74 -51.93 -0.40 0.39 16 25 H 0.12 3.00 5.41 -51.93 -0.28 2.72 16 26 H 0.06 1.37 6.50 -51.92 -0.34 1.03 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.12 2.72 6.42 -52.49 -0.34 2.38 16 29 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.10 2.05 6.18 -52.49 -0.32 1.73 16 LS Contribution 269.46 15.07 4.06 4.06 Total: -1.00 -28.64 269.46 -6.47 -35.11 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.13 Total: 3.65 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.34 Total: -16.28 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.33 Total: -34.30 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.37 Total: -8.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.64 -6.47 -35.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.745 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds