Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 C 1.53002 * 109.46877 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47382 * 65.00188 * 4 3 2 6 6 C 1.36845 * 119.99771 * 264.60149 * 5 4 3 7 7 H 1.07999 * 120.00099 * 144.19446 * 6 5 4 8 8 C 1.38798 * 119.99886 * 324.19115 * 6 5 4 9 9 N 1.31587 * 120.00220 * 339.65921 * 8 6 5 10 10 Si 1.86804 * 119.99816 * 159.66017 * 8 6 5 11 11 H 1.48499 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46896 * 120.00175 * 10 8 6 13 13 H 1.48503 * 109.47140 * 239.99796 * 10 8 6 14 14 C 1.39297 * 120.00006 * 84.59458 * 5 4 3 15 15 C 1.39082 * 120.08466 * 180.02562 * 14 5 4 16 16 C 1.38049 * 119.90710 * 179.97438 * 15 14 5 17 17 C 1.38334 * 120.08801 * 359.97438 * 16 15 14 18 18 C 1.38326 * 120.18397 * 0.02562 * 17 16 15 19 19 C 1.38055 * 120.08670 * 0.02562 * 18 17 16 20 20 H 1.09001 * 109.47375 * 300.00165 * 1 2 3 21 21 H 1.09002 * 109.47319 * 59.99864 * 1 2 3 22 22 H 1.09007 * 109.47027 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47220 * 60.00087 * 3 2 1 24 24 H 1.08998 * 109.47197 * 299.99793 * 3 2 1 25 25 H 1.08998 * 109.47224 * 304.99737 * 4 3 2 26 26 H 1.09008 * 109.46931 * 185.00097 * 4 3 2 27 27 H 0.96999 * 120.00126 * 179.97438 * 9 8 6 28 28 H 1.07995 * 120.04750 * 359.70780 * 15 14 5 29 29 H 1.07996 * 119.95893 * 180.02562 * 16 15 14 30 30 H 1.08007 * 119.90900 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.95841 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.04670 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2031 -0.7839 -1.3054 7 1 3.9615 -1.3377 -2.2005 8 6 4.7443 -1.4397 -0.2084 9 7 5.4009 -0.7594 0.7069 10 14 4.5407 -3.2881 -0.0313 11 1 3.7687 -3.8140 -1.1857 12 1 5.8783 -3.9324 0.0039 13 1 3.8138 -3.5876 1.2286 14 6 4.1626 1.3474 -2.3896 15 6 4.5800 0.7603 -3.5794 16 6 4.7637 1.5395 -4.7041 17 6 4.5326 2.9023 -4.6489 18 6 4.1173 3.4900 -3.4675 19 6 3.9324 2.7180 -2.3381 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8514 0.5683 0.8409 26 1 3.9784 2.1766 0.0889 27 1 5.7789 -1.2177 1.4737 28 1 4.7644 -0.3029 -3.6222 29 1 5.0874 1.0845 -5.6285 30 1 4.6775 3.5093 -5.5304 31 1 3.9375 4.5542 -3.4287 32 1 3.6085 3.1775 -1.4160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610215540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = -21.736379 kcal Electronic energy + Delta-G solvation = -15223.581563 eV Core-core repulsion = 12763.004232 eV Total energy + Delta-G solvation = -2460.577331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26360 -38.64626 -37.02398 -33.83999 -31.89654 -30.92301 -29.42226 -27.31341 -26.07194 -23.84110 -22.81967 -21.57332 -19.01635 -18.37307 -17.08951 -16.97099 -16.59152 -16.00158 -15.76092 -15.55275 -14.84054 -14.55489 -14.17693 -13.93598 -13.57784 -13.17890 -12.89499 -12.84208 -12.50974 -12.40159 -12.14203 -11.91602 -11.84339 -11.37847 -11.02697 -10.49353 -10.18802 -9.52856 -8.44572 -7.95013 -5.73523 0.87482 1.06069 1.41754 1.45479 1.54132 2.33255 2.99114 3.01850 3.25272 3.43895 4.26712 4.34231 4.37867 4.42931 4.52386 4.56161 4.60814 4.63149 4.72815 4.82059 4.93768 5.05947 5.24371 5.41586 5.50659 5.54451 5.89391 5.93570 6.04705 6.20280 6.44987 6.53861 6.88653 7.55095 7.88365 8.80428 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.011600 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.439046 B = 2413.235995 C = 3104.711749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.114 3.886 5 N -0.460 5.460 6 C -0.300 4.300 7 H 0.069 0.931 8 C -0.006 4.006 9 N -0.902 5.902 10 Si 0.974 3.026 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.193 3.807 15 C -0.236 4.236 16 C -0.073 4.073 17 C -0.231 4.231 18 C -0.068 4.068 19 C -0.249 4.249 20 H 0.053 0.947 21 H 0.041 0.959 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.266 0.734 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 4.749 -2.595 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.021 4.021 4 C -0.011 4.011 5 N -0.150 5.150 6 C -0.429 4.429 7 H 0.087 0.913 8 C -0.206 4.206 9 N -0.540 5.540 10 Si 0.800 3.200 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.080 3.920 15 C -0.260 4.260 16 C -0.091 4.091 17 C -0.253 4.253 18 C -0.086 4.086 19 C -0.273 4.273 20 H 0.072 0.928 21 H 0.059 0.941 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.198 4.359 -2.161 7.880 hybrid contribution -0.125 -0.825 0.397 0.924 sum -6.323 3.535 -1.763 7.455 Atomic orbital electron populations 1.22870 0.80759 1.03126 1.00324 1.88079 1.20388 1.28344 1.95317 1.23018 0.94773 0.84587 0.99726 1.21514 0.91279 0.98036 0.90234 1.42355 1.60848 1.05259 1.06527 1.19264 1.38769 0.83049 1.01822 0.91291 1.25910 0.94435 1.03314 0.96942 1.70052 1.33222 1.37793 1.12978 0.85155 0.77619 0.78967 0.78285 1.19219 1.20731 1.20483 1.18627 0.93462 0.91056 0.88854 1.20636 1.12259 0.99566 0.93569 1.21008 0.96920 0.94396 0.96815 1.20875 1.10769 0.94709 0.98913 1.21004 0.96154 0.99445 0.92035 1.20653 1.14685 0.91850 1.00074 0.92831 0.94079 0.89343 0.91471 0.94062 0.89247 0.91252 0.92479 0.88509 0.85413 0.84944 0.84514 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -17.05 10.43 -148.98 -1.55 -18.60 16 3 C 0.06 2.22 6.16 71.98 0.44 2.66 16 4 C 0.11 5.30 4.97 86.38 0.43 5.73 16 5 N -0.46 -23.75 2.61 -511.84 -1.33 -25.09 16 6 C -0.30 -16.61 8.32 84.05 0.70 -15.91 16 7 H 0.07 3.89 6.77 -2.91 -0.02 3.87 16 8 C -0.01 -0.31 4.95 84.86 0.42 0.11 16 9 N -0.90 -50.59 11.35 21.65 0.25 -50.35 16 10 Si 0.97 44.00 29.60 68.60 2.03 46.04 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.19 9.25 6.49 38.36 0.25 9.50 16 15 C -0.24 -10.93 9.26 22.43 0.21 -10.73 16 16 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 17 C -0.23 -7.93 10.04 22.31 0.22 -7.70 16 18 C -0.07 -2.37 10.04 22.25 0.22 -2.14 16 19 C -0.25 -10.24 8.80 22.43 0.20 -10.05 16 20 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.04 1.58 7.74 -2.39 -0.02 1.56 16 25 H 0.09 4.70 5.41 -2.39 -0.01 4.69 16 26 H 0.07 3.01 6.50 -2.38 -0.02 3.00 16 27 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.10 4.73 6.42 -2.91 -0.02 4.72 16 29 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.11 4.34 6.18 -2.91 -0.02 4.32 16 Total: -1.00 -62.73 269.46 5.05 -57.67 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.10 Total: 19.38 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.57 Total: -29.06 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.09 Total: -75.43 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.55 Total: -18.60 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.73 5.05 -57.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.938 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds