Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47177 * 2 1 4 4 C 1.50703 * 109.47016 * 240.00167 * 2 1 3 5 5 C 1.34509 * 125.79273 * 99.71698 * 4 2 1 6 6 C 1.41382 * 106.84328 * 179.89052 * 5 4 2 7 7 C 1.34508 * 106.83836 * 0.37083 * 6 5 4 8 8 O 1.34307 * 125.78420 * 280.02326 * 4 2 1 9 9 N 1.46505 * 109.47130 * 120.00348 * 2 1 3 10 10 C 1.36930 * 119.99642 * 242.40061 * 9 2 1 11 11 H 1.08004 * 119.99473 * 212.53048 * 10 9 2 12 12 C 1.38813 * 120.00627 * 32.25641 * 10 9 2 13 13 N 1.31624 * 119.99697 * 18.21143 * 12 10 9 14 14 Si 1.86792 * 120.00271 * 198.21218 * 12 10 9 15 15 H 1.48500 * 109.47416 * 59.99867 * 14 12 10 16 16 H 1.48498 * 109.47350 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47104 * 299.99870 * 14 12 10 18 18 C 1.46497 * 119.99886 * 62.39571 * 9 2 1 19 19 C 1.53002 * 117.49636 * 193.61012 * 18 9 2 20 20 C 1.53002 * 117.49704 * 124.94986 * 18 9 2 21 21 H 1.08992 * 109.47177 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46739 * 299.99803 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99829 * 1 2 3 24 24 H 1.08001 * 126.57284 * 0.02864 * 5 4 2 25 25 H 1.07999 * 126.58104 * 180.17175 * 6 5 4 26 26 H 1.08004 * 125.78826 * 179.75409 * 7 6 5 27 27 H 0.96998 * 120.00047 * 184.97453 * 13 12 10 28 28 H 1.08998 * 115.55237 * 339.27520 * 18 9 2 29 29 H 1.08997 * 117.49938 * 359.97438 * 19 18 9 30 30 H 1.09002 * 117.49990 * 145.02529 * 19 18 9 31 31 H 1.09006 * 117.49454 * 214.97576 * 20 18 9 32 32 H 1.08996 * 117.49477 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.4682 -0.1192 -2.3574 6 6 2.8432 -1.1543 -3.2444 7 6 2.6064 -2.3163 -2.6096 8 8 2.1153 -2.0414 -1.3901 9 7 2.0184 -0.6907 1.1962 10 6 2.7646 -0.0118 2.1220 11 1 3.5345 -0.5266 2.6776 12 6 2.5353 1.3394 2.3426 13 7 1.4037 1.8871 1.9530 14 14 3.8328 2.3804 3.1923 15 1 5.0869 2.3544 2.3975 16 1 3.3485 3.7796 3.3061 17 1 4.0949 1.8350 4.5485 18 6 1.7083 -2.1076 1.4017 19 6 1.9608 -2.6914 2.7932 20 6 2.8824 -3.0621 1.6285 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.5233 0.9426 -2.5471 25 1 3.2403 -1.0350 -4.2416 26 1 2.7812 -3.3030 -3.0123 27 1 1.2723 2.8441 2.0413 28 1 0.8516 -2.4870 0.8447 29 1 2.3581 -2.0213 3.5556 30 1 1.2706 -3.4552 3.1515 31 1 2.7980 -4.0695 1.2209 32 1 3.8855 -2.6357 1.6243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610663328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = 63.199374 kcal Electronic energy + Delta-G solvation = -15576.265676 eV Core-core repulsion = 13119.371435 eV Total energy + Delta-G solvation = -2456.894241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78630 -37.19771 -34.13063 -32.27383 -31.71961 -29.03930 -27.54648 -24.26287 -22.45101 -21.32302 -20.96101 -20.14218 -19.22965 -17.05067 -15.98577 -15.38685 -15.16269 -14.43437 -13.90094 -13.57025 -12.82976 -12.38424 -12.12796 -12.10538 -11.95724 -11.70982 -11.09792 -10.91495 -10.80028 -10.57068 -10.27431 -10.22901 -9.84850 -9.64899 -9.24773 -9.21053 -8.47374 -7.68792 -6.68308 -5.91343 -3.40680 2.49687 3.28963 3.35062 3.40212 3.42804 3.80286 4.40917 4.98858 5.16115 5.29838 5.50552 5.63533 5.77383 5.95620 6.14553 6.21585 6.38750 6.46354 6.52017 6.53225 6.53807 6.69017 6.74188 6.86731 7.05544 7.16074 7.18561 7.26870 7.50503 7.75317 7.95530 8.36327 9.09017 9.70023 10.24836 11.13552 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.011826 C = 0.009918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.800286 B = 2367.174555 C = 2822.589580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.262 3.738 3 H 0.122 0.878 4 C 0.022 3.978 5 C -0.247 4.247 6 C -0.214 4.214 7 C -0.075 4.075 8 O -0.162 6.162 9 N -0.547 5.547 10 C -0.258 4.258 11 H 0.068 0.932 12 C 0.012 3.988 13 N -0.893 5.893 14 Si 0.901 3.099 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.281 1.281 18 C 0.136 3.864 19 C -0.200 4.200 20 C -0.219 4.219 21 H 0.031 0.969 22 H 0.088 0.912 23 H 0.036 0.964 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.189 0.811 27 H 0.257 0.743 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 -5.200 -6.017 7.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.139 0.861 4 C -0.031 4.031 5 C -0.266 4.266 6 C -0.233 4.233 7 C -0.143 4.143 8 O -0.057 6.057 9 N -0.263 5.263 10 C -0.387 4.387 11 H 0.085 0.915 12 C -0.188 4.188 13 N -0.536 5.536 14 Si 0.730 3.270 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.207 1.207 18 C 0.027 3.973 19 C -0.239 4.239 20 C -0.260 4.260 21 H 0.050 0.950 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.156 0.844 25 H 0.153 0.847 26 H 0.205 0.795 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.064 -5.196 -5.703 7.716 hybrid contribution 0.923 0.612 0.059 1.109 sum 0.859 -4.584 -5.644 7.322 Atomic orbital electron populations 1.22150 0.96396 0.99736 1.02133 1.19171 0.92537 0.95092 0.77731 0.86069 1.24591 0.99798 0.79853 0.98882 1.21477 1.10206 1.00038 0.94924 1.21659 1.07722 0.92756 1.01180 1.23798 1.05703 0.99650 0.85167 1.84131 1.64170 1.25574 1.31815 1.43443 1.59509 1.04368 1.18934 1.19027 1.10849 0.92591 1.16236 0.91480 1.25101 0.95990 0.98774 0.98926 1.70022 1.21458 1.11237 1.50868 0.86402 0.81530 0.79419 0.79677 1.20878 1.21462 1.20655 1.20935 0.95193 0.85041 0.96135 1.23133 1.03694 1.03317 0.93740 1.23272 0.97772 1.00045 1.04880 0.94956 0.89354 0.94487 0.84389 0.84662 0.79454 0.93272 0.89256 0.88398 0.90806 0.90961 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.05 37.16 0.34 -2.79 16 2 C 0.26 6.07 2.23 -69.08 -0.15 5.92 16 3 H 0.12 3.10 6.10 -51.93 -0.32 2.78 16 4 C 0.02 0.47 6.07 -35.62 -0.22 0.25 16 5 C -0.25 -4.78 10.80 -39.70 -0.43 -5.21 16 6 C -0.21 -3.60 10.91 -39.71 -0.43 -4.03 16 7 C -0.08 -1.25 12.09 29.41 0.36 -0.90 16 8 O -0.16 -3.26 9.05 5.68 0.05 -3.20 16 9 N -0.55 -13.41 2.71 -159.45 -0.43 -13.84 16 10 C -0.26 -6.83 8.29 -15.06 -0.12 -6.96 16 11 H 0.07 1.80 6.98 -52.48 -0.37 1.43 16 12 C 0.01 0.31 4.82 -17.43 -0.08 0.23 16 13 N -0.89 -24.07 10.41 55.49 0.58 -23.49 16 14 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 C 0.14 2.99 4.66 -67.93 -0.32 2.67 16 19 C -0.20 -4.07 9.79 -26.69 -0.26 -4.33 16 20 C -0.22 -4.40 10.09 -26.69 -0.27 -4.66 16 21 H 0.03 0.65 7.02 -51.93 -0.36 0.29 16 22 H 0.09 2.10 7.18 -51.93 -0.37 1.72 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 25 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.19 2.29 8.06 -52.48 -0.42 1.87 16 27 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 28 H 0.09 1.90 6.94 -51.93 -0.36 1.54 16 29 H 0.10 2.17 6.82 -51.93 -0.35 1.81 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.79 8.08 -51.93 -0.42 1.37 16 LS Contribution 267.91 15.07 4.04 4.04 Total: -1.00 -27.63 267.91 -6.62 -34.25 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.23 Total: 6.03 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.60 Total: -19.81 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.15 Total: -37.34 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.05 Total: -3.20 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.63 -6.62 -34.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610663328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.453 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds