Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47177 * 2 1 4 4 C 1.50703 * 109.47016 * 240.00167 * 2 1 3 5 5 C 1.34509 * 125.79273 * 99.71698 * 4 2 1 6 6 C 1.41382 * 106.84328 * 179.89052 * 5 4 2 7 7 C 1.34508 * 106.83836 * 0.37083 * 6 5 4 8 8 O 1.34307 * 125.78420 * 280.02326 * 4 2 1 9 9 N 1.46505 * 109.47130 * 120.00348 * 2 1 3 10 10 C 1.36930 * 119.99642 * 242.40061 * 9 2 1 11 11 H 1.08004 * 119.99473 * 212.53048 * 10 9 2 12 12 C 1.38813 * 120.00627 * 32.25641 * 10 9 2 13 13 N 1.31624 * 119.99697 * 18.21143 * 12 10 9 14 14 Si 1.86792 * 120.00271 * 198.21218 * 12 10 9 15 15 H 1.48500 * 109.47416 * 59.99867 * 14 12 10 16 16 H 1.48498 * 109.47350 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47104 * 299.99870 * 14 12 10 18 18 C 1.46497 * 119.99886 * 62.39571 * 9 2 1 19 19 C 1.53002 * 117.49636 * 193.61012 * 18 9 2 20 20 C 1.53002 * 117.49704 * 124.94986 * 18 9 2 21 21 H 1.08992 * 109.47177 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46739 * 299.99803 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99829 * 1 2 3 24 24 H 1.08001 * 126.57284 * 0.02864 * 5 4 2 25 25 H 1.07999 * 126.58104 * 180.17175 * 6 5 4 26 26 H 1.08004 * 125.78826 * 179.75409 * 7 6 5 27 27 H 0.96998 * 120.00047 * 184.97453 * 13 12 10 28 28 H 1.08998 * 115.55237 * 339.27520 * 18 9 2 29 29 H 1.08997 * 117.49938 * 359.97438 * 19 18 9 30 30 H 1.09002 * 117.49990 * 145.02529 * 19 18 9 31 31 H 1.09006 * 117.49454 * 214.97576 * 20 18 9 32 32 H 1.08996 * 117.49477 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.4682 -0.1192 -2.3574 6 6 2.8432 -1.1543 -3.2444 7 6 2.6064 -2.3163 -2.6096 8 8 2.1153 -2.0414 -1.3901 9 7 2.0184 -0.6907 1.1962 10 6 2.7646 -0.0118 2.1220 11 1 3.5345 -0.5266 2.6776 12 6 2.5353 1.3394 2.3426 13 7 1.4037 1.8871 1.9530 14 14 3.8328 2.3804 3.1923 15 1 5.0869 2.3544 2.3975 16 1 3.3485 3.7796 3.3061 17 1 4.0949 1.8350 4.5485 18 6 1.7083 -2.1076 1.4017 19 6 1.9608 -2.6914 2.7932 20 6 2.8824 -3.0621 1.6285 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.5233 0.9426 -2.5471 25 1 3.2403 -1.0350 -4.2416 26 1 2.7812 -3.3030 -3.0123 27 1 1.2723 2.8441 2.0413 28 1 0.8516 -2.4870 0.8447 29 1 2.3581 -2.0213 3.5556 30 1 1.2706 -3.4552 3.1515 31 1 2.7980 -4.0695 1.2209 32 1 3.8855 -2.6357 1.6243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610663328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = 48.680613 kcal Electronic energy + Delta-G solvation = -15576.895257 eV Core-core repulsion = 13119.371435 eV Total energy + Delta-G solvation = -2457.523821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.22985 -38.94145 -35.86330 -33.87177 -33.44452 -30.82515 -29.09748 -26.19918 -24.09043 -22.94144 -22.42090 -21.77026 -20.88299 -18.72192 -17.69328 -17.02416 -16.66702 -16.28821 -15.74730 -15.12587 -14.54188 -13.93577 -13.84983 -13.64733 -13.50266 -13.22261 -12.95803 -12.79581 -12.65610 -12.18973 -12.12372 -12.00441 -11.65893 -11.40456 -10.90359 -10.64356 -10.42658 -9.14810 -8.57232 -7.89091 -5.41510 1.06725 1.46242 1.48433 1.54707 1.88104 2.39119 2.48943 3.16253 3.40895 3.52553 4.07375 4.28267 4.32148 4.36270 4.50519 4.56067 4.71406 4.81382 4.94253 4.95154 5.05106 5.08843 5.18702 5.34210 5.39907 5.46275 5.53633 5.62881 5.75873 5.82440 6.39643 6.48900 7.13021 7.80060 8.30898 9.12192 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.011826 C = 0.009918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.800286 B = 2367.174555 C = 2822.589580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.265 3.735 3 H 0.089 0.911 4 C -0.012 4.012 5 C -0.250 4.250 6 C -0.220 4.220 7 C -0.064 4.064 8 O -0.177 6.177 9 N -0.562 5.562 10 C -0.266 4.266 11 H 0.057 0.943 12 C -0.030 4.030 13 N -0.912 5.912 14 Si 0.956 3.044 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.116 3.884 19 C -0.195 4.195 20 C -0.200 4.200 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.141 0.859 25 H 0.168 0.832 26 H 0.235 0.765 27 H 0.254 0.746 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 -6.734 -7.216 9.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.107 0.893 4 C -0.064 4.064 5 C -0.270 4.270 6 C -0.239 4.239 7 C -0.131 4.131 8 O -0.072 6.072 9 N -0.279 5.279 10 C -0.396 4.396 11 H 0.075 0.925 12 C -0.228 4.228 13 N -0.555 5.555 14 Si 0.784 3.216 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.204 1.204 18 C 0.008 3.992 19 C -0.234 4.234 20 C -0.241 4.241 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.159 0.841 25 H 0.186 0.814 26 H 0.251 0.749 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.432 -6.745 -6.906 9.663 hybrid contribution 0.786 1.007 0.351 1.325 sum 1.218 -5.738 -6.555 8.796 Atomic orbital electron populations 1.21962 0.95747 0.99903 1.01406 1.18872 0.92995 0.93867 0.78519 0.89307 1.24069 1.02695 0.80805 0.98862 1.21769 1.09144 1.01009 0.95059 1.22020 1.07765 0.91821 1.02329 1.24758 1.03085 1.01660 0.83557 1.84090 1.64813 1.24730 1.33588 1.43568 1.59803 1.05335 1.19181 1.19124 1.10863 0.93104 1.16521 0.92534 1.25696 0.97499 0.99610 0.99977 1.70136 1.22477 1.11003 1.51931 0.85543 0.79387 0.77957 0.78737 1.20997 1.21441 1.20410 1.21091 0.96470 0.84159 0.97475 1.23138 1.04147 1.03368 0.92715 1.23204 0.96044 1.00700 1.04108 0.94158 0.92136 0.93003 0.84067 0.81406 0.74914 0.93656 0.88542 0.90739 0.87878 0.88008 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 9.05 71.98 0.65 -5.08 16 2 C 0.26 12.48 2.23 44.25 0.10 12.58 16 3 H 0.09 4.72 6.10 -2.39 -0.01 4.70 16 4 C -0.01 -0.49 6.07 24.83 0.15 -0.34 16 5 C -0.25 -9.39 10.80 22.19 0.24 -9.15 16 6 C -0.22 -6.72 10.91 22.19 0.24 -6.48 16 7 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 8 O -0.18 -6.74 9.05 -2.59 -0.02 -6.77 16 9 N -0.56 -27.95 2.71 -658.38 -1.78 -29.73 16 10 C -0.27 -14.42 8.29 84.03 0.70 -13.72 16 11 H 0.06 3.11 6.98 -2.91 -0.02 3.09 16 12 C -0.03 -1.64 4.82 84.86 0.41 -1.23 16 13 N -0.91 -50.52 10.41 21.65 0.23 -50.29 16 14 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.12 5.02 4.66 44.99 0.21 5.23 16 19 C -0.20 -7.73 9.79 30.62 0.30 -7.43 16 20 C -0.20 -7.71 10.09 30.62 0.31 -7.40 16 21 H 0.04 1.63 7.02 -2.39 -0.02 1.62 16 22 H 0.06 2.95 7.18 -2.39 -0.02 2.93 16 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 25 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.23 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.25 13.68 8.32 -92.71 -0.77 12.91 16 28 H 0.10 3.99 6.94 -2.39 -0.02 3.97 16 29 H 0.07 3.31 6.82 -2.39 -0.02 3.29 16 30 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 32 H 0.06 2.69 8.08 -2.39 -0.02 2.67 16 Total: -1.00 -59.87 267.91 5.67 -54.21 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.10 Total: 20.54 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.12 Total: -34.08 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.56 Total: -80.03 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.02 Total: -6.77 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.87 5.67 -54.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610663328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.890 kcal (2) G-P(sol) polarization free energy of solvation -59.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds